Evidence map›Paper›PMID 31740504›Full record

ArticlePlant physiology2020

Shared Genetic Control of Root System Architecture between

Zihao Zheng, Stefan Hey, Talukder Jubery, Huyu Liu, Yu Yang, Lisa Coffey, Chenyong Miao, Brandi Sigmon, James C Schnable, Frank Hochholdinger and 2 more

Open access · bronzeAbstract read
In one paragraph

Article in Plant physiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed, 1 pooled it
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 1 synthesis or guideline pooled it, 76 citations in OpenAlex.

  1. Pooled it
  2. Review
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Genomic basis determining root system architecture in maize.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024
    Article
  13. Review
  14. Article
  15. Article
  16. Genetic dissection of root architecture in Ethiopian sorghum landraces.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  17. Article
  18. Article
  19. Article
  20. The elite variations in germplasms for soybean breeding.Molecular breeding : new strategies in plant improvement · 2023
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 3 countries.

Zihao ZhengDepartment of Agronomy, Iowa State University, Ames, Iowa 50011.ORCID 0000-0003-0598-462X
Stefan HeyDepartment of Agronomy, Iowa State University, Ames, Iowa 50011.
Talukder JuberyDepartment of Mechanical Engineering, Iowa State University, Ames, Iowa 50011.
Huyu LiuDepartment of Agronomy, Iowa State University, Ames, Iowa 50011.
Yu YangDepartment of Agronomy, Iowa State University, Ames, Iowa 50011.
Lisa CoffeyDepartment of Agronomy, Iowa State University, Ames, Iowa 50011.
Chenyong MiaoDepartment of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, Nebraska 68583.ORCID 0000-0002-0904-3707
Brandi SigmonDepartment of Plant Pathology, University of Nebraska-Lincoln, Lincoln, Nebraska 68583.ORCID 0000-0003-3914-6894
James C SchnableDepartment of Agronomy and Horticulture, University of Nebraska-Lincoln, Lincoln, Nebraska 68583 schnable@iastate.edu.ORCID 0000-0001-6739-5527
Frank HochholdingerINRES, Institute of Crop Science and Resource Conservation, Crop Functional Genomics, University of Bonn, Bonn 53113, Germany.ORCID 0000-0002-5155-0884
Baskar GanapathysubramanianDepartment of Mechanical Engineering, Iowa State University, Ames, Iowa 50011.
Patrick S SchnableDepartment of Agronomy, Iowa State University, Ames, Iowa 50011 schnable@iastate.edu.ORCID 0000-0001-9169-5204
Iowa State University · USUniversity of Nebraska–Lincoln · USUniversity of Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Determining the genetic control of root system architecture (RSA) in plants via large-scale genome-wide association study (GWAS) requires high-throughput pipelines for root phenotyping. We developed Core Root Excavation using Compressed-air (CREAMD), a high-throughput pipeline for the cleaning of field-grown roots, and Core Root Feature Extraction (COFE), a semiautomated pipeline for the extraction of RSA traits from images. CREAMD-COFE was applied to diversity panels of maize (

Indexed as

Biological Variation, PopulationDatabases, GeneticGene Regulatory NetworksGenetic Association StudiesGenome-Wide Association StudyGenotypeImage Processing, Computer-AssistedPhenotypePlant RootsPolymorphism, Single NucleotideQuantitative Trait LociSoftwareSorghumZea mays

Identifiers

PMID31740504
PMCPMC6997706
OpenAlexW2989713062

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.