Evidence map›Paper›PMID 31740367›Full record

ArticleProtein expression and purification2020

N-terminal fusion of the N-terminal domain of bacterial enzyme I facilitates recombinant expression and purification of the human RNA demethylases FTO and Alkbh5.

Balabhadra Khatiwada, Jeffrey A Purslow, Eric S Underbakke, Vincenzo Venditti

Abstract read
In one paragraph

Article in Protein expression and purification, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

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10citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

10 citing papers in PubMed.

  1. Biomolecular NMR assignments · 2026
    Article
  2. Review
  3. Article
  4. Biomolecular NMR assignments · 2025
    Article
  5. Article
  6. Article
  7. Article
  8. Science advances · 2021
    Article
  9. Article
  10. Article
4 · The record

Corrections and comments

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5 · Who and what money

Authors and funding

4 authors.

Balabhadra KhatiwadaDepartment of Chemistry, Iowa State University, Ames, IA, 50011, USA.
Jeffrey A PurslowDepartment of Chemistry, Iowa State University, Ames, IA, 50011, USA.
Eric S UnderbakkeRoy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, 50011, USA.
Vincenzo VendittiDepartment of Chemistry, Iowa State University, Ames, IA, 50011, USA; Roy J. Carver Department of Biochemistry, Biophysics and Molecular Biology, Iowa State University, Ames, IA, 50011, USA. Electronic address: venditti@iastate.edu.

Funding

Atomic-level characterization of self-regulatory mechanisms in large multidomain enzymesR35GM133488 · NIGMS · IOWA STATE UNIVERSITY · PI Vincenzo Venditti · 2019 to 2026
$2.9M
NIGMS NIH HHS R35 GM133488
6 · The paper itself

Abstract

Various fusion tags are commonly employed to increase the heterologous expression and solubility of aggregation-prone proteins within Escherichia coli. Herein, we present a protocol for efficient recombinant expression and purification of the human RNA demethylases Alkbh5 and FTO. Our method incorporates a novel fusion tag (the N-terminal domain of bacterial enzyme I, EIN) that dramatically increases the solubility of its fusion partner and is promptly removed upon digestion with a protease. The presented protocol allows for the production of mg amounts of Alkbh5 and FTO in 1L of both rich and minimal media. We developed a liquid chromatography-mass spectrometry (LC-MS)-based assay to confirm that both proteins are enzymatically active. Furthermore, the LC-MS method developed here is applicable to other members of the AlkB family of Fe(II)/α-ketoglutarate-dependent dioxygenases. The superior protein yield, afforded by our expression and purification method, will facilitate biochemical investigations into the biological function of the human RNA demethylases and endorse employment of EIN as a broadly applicable fusion tag for recombinant expression projects.

Indexed as

AlkB Homolog 5, RNA DemethylaseAlpha-Ketoglutarate-Dependent Dioxygenase FTORecombinant Fusion ProteinsBacterial ProteinsChromatography, LiquidEscherichia coliExpressed Sequence TagsMass SpectrometryProtein EngineeringRecombinant ProteinsSolubilityAlkB Homolog 5, RNA DemethylaseAlpha-Ketoglutarate-Dependent Dioxygenase FTOBacterial ProteinsFTO protein, humanRecombinant Fusion ProteinsRecombinant ProteinsEnzyme IGene fusionN(6)-methyladenosineRecombinant expressionSolubility tag

Identifiers

PMID31740367
PMCPMC6942671

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.