ArticleiScience2019
A High-Quality Melon Genome Assembly Provides Insights into Genetic Basis of Fruit Trait Improvement.
Article in iScience, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.
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Who cites it
25 citing papers in PubMed.
- Synergistic regulation of abiotic stress adaptation by copper miRNAs miR398 and miR408 in melon.The Plant journal : for cell and molecular biology · 2026Article
- Rootstock selection shapes melon taste by divergent regulation of sugar and amino acid metabolism.Frontiers in plant science · 2026Article
- Nuclear and organelle genome assemblies of 5 Cucumis melo L. accessions, Ananas, Canton, PI 414723, Vedrantais, and Zhimali, belonging to diverse botanical groups.G3 (Bethesda, Md.) · 2025Article
- Validation of CRISPR construct activity and gene function in melon via a hairy root transformation system.Physiology and molecular biology of plants : an international journal of functional plant biology · 2025Article
- Fine mapping and identification of CqMYB62 as the subgynoecy gene in chieh-qua (Benincasa hispida Cogn. var. Chieh-qua How).TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2025Article
- Current and future pangenomic research in cucurbit crops.Breeding science · 2025Article
- The Development and Application of Vegetable Genomics Increase the Efficiency of Exploring New Gene Resources for Vegetables.International journal of molecular sciences · 2024Article
- Chromosome-level genome assembly and population genomics reveals crucial selection for subgynoecy development in chieh-qua.Horticulture research · 2024Article
- A wild melon reference genome provides novel insights into the domestication of a key gene responsible for melon fruit acidity.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2024Article
- Crop Landraces and Indigenous Varieties: A Valuable Source of Genes for Plant Breeding.Plants (Basel, Switzerland) · 2024Review
- The haplotype-resolved T2T reference genome highlights structural variation underlying agronomic traits of melon.Horticulture research · 2023Article
- Telomere-to-telomere genome assembly of melon (Horticulture research · 2023Article
- Identification of novel sex determination loci in Japanese weedy melon.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023Article
- Vegetable biology and breeding in the genomics era.Science China. Life sciences · 2023Review
- CuGenDBv2: an updated database for cucurbit genomics.Nucleic acids research · 2023Article
- Telomere-to-telomere genome assembly of bitter melon (Horticulture research · 2023Article
- Pan-genome and multi-parental framework for high-resolution trait dissection in melon (Cucumis melo).The Plant journal : for cell and molecular biology · 2022Article
- Cantaloupe melon genome reveals 3D chromatin features and structural relationship with the ancestral cucurbitaceae karyotype.iScience · 2022Article
- Chromosome-level genome assembly of Gynostemma pentaphyllum provides insights into gypenoside biosynthesis.DNA research : an international journal for rapid publication of reports on genes and genomes · 2021Article
- Building a cluster of NLR genes conferring resistance to pests and pathogens: the story of the Vat gene cluster in cucurbits.Horticulture research · 2021Article
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Authors and funding
17 authors.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Accurate reference genomes have become indispensable tools for characterization of genetic and functional variations. Here we generated a high-quality assembly of the melon Payzawat using a combination of short-read sequencing, single-molecule real-time sequencing, Hi-C, and a high-density genetic map. The final 12 chromosome-level scaffolds cover ∼94.13% of the estimated genome (398.57 Mb). Compared with the published DHL92 genome, our assembly exhibits a 157-fold increase in contig length and remarkable improvements in the assembly of centromeres and telomeres. Six genes within STHQF12.4 on pseudochromosome 12, identified from whole-genome comparison between Payzawat and DHL92, may explain a considerable proportion of the skin thickness. In addition, our population study showed that melon domesticated at multiple times from whole-genome perspective and melons in China are introduced from different routes. Selective sweeps underlying the genes related to desirable traits, haplotypes of alleles associated with agronomic traits, and the variants from resequencing data enable efficient breeding.
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