Evidence map›Paper›PMID 31738431›Full record

ArticleJournal of experimental botany2019

Integrative analysis of hexaploid wheat roots identifies signature components during iron starvation.

Gazaldeep Kaur, Vishnu Shukla, Anil Kumar, Mandeep Kaur, Parul Goel, Palvinder Singh, Anuj Shukla, Varsha Meena, Jaspreet Kaur, Jagtar Singh and 3 more

Abstract read
In one paragraph

Article in Journal of experimental botany, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Multi-Omics Uncover the Mechanism of Wheat under Heavy Metal Stress.International journal of molecular sciences · 2022
    Review
  6. Article
  7. Review
  8. Review
  9. Article
  10. Article
  11. Article
  12. Review
  13. Review
  14. Review
  15. Article
  16. Biofortification and bioavailability of Zn, Fe and Se in wheat: present status and future prospects.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2021
    Review
  17. Review
  18. Article
  19. Iron deficiency triggered transcriptome changes in bread wheat.Computational and structural biotechnology journal · 2020
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Gazaldeep KaurNational Agri-Food Biotechnology Institute (Department of Biotechnology), Mohali, Punjab, India.
Vishnu ShuklaNational Agri-Food Biotechnology Institute (Department of Biotechnology), Mohali, Punjab, India.
Anil KumarNational Agri-Food Biotechnology Institute (Department of Biotechnology), Mohali, Punjab, India.
Mandeep KaurNational Agri-Food Biotechnology Institute (Department of Biotechnology), Mohali, Punjab, India.
Parul GoelNational Agri-Food Biotechnology Institute (Department of Biotechnology), Mohali, Punjab, India.
Palvinder SinghNational Agri-Food Biotechnology Institute (Department of Biotechnology), Mohali, Punjab, India.
Anuj ShuklaNational Agri-Food Biotechnology Institute (Department of Biotechnology), Mohali, Punjab, India.
Varsha MeenaNational Agri-Food Biotechnology Institute (Department of Biotechnology), Mohali, Punjab, India.
Jaspreet KaurUniversity Institute of Engineering and Technology, Panjab University, Chandigarh, India.
Jagtar SinghDepartment of Biotechnology, Panjab University, Chandigarh, India.
Shrikant MantriNational Agri-Food Biotechnology Institute (Department of Biotechnology), Mohali, Punjab, India.
Hatem RouachedBPMP, Université de Montpellier, INRA, CNRS, Montpellier SupAgro, Montpellier, France.
Ajay Kumar PandeyNational Agri-Food Biotechnology Institute (Department of Biotechnology), Mohali, Punjab, India.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Iron (Fe) is an essential micronutrient for all organisms. In crop plants, Fe deficiency can decrease crop yield significantly; however, our current understanding of how major crops respond to Fe deficiency remains limited. Herein, the effect of Fe deprivation at both the transcriptomic and metabolic level in hexaploid wheat was investigated. Genome-wide gene expression reprogramming was observed in wheat roots subjected to Fe starvation, with a total of 5854 genes differentially expressed. Homoeologue and subgenome-specific analysis unveiled the induction-biased contribution from the A and B genomes. In general, the predominance of genes coding for nicotianamine synthase, yellow stripe-like transporters, metal transporters, ABC transporters, and zinc-induced facilitator-like protein was noted. Expression of genes related to the Strategy II mode of Fe uptake was also predominant. Our transcriptomic data were in agreement with the GC-MS analysis that showed the enhanced accumulation of various metabolites such as fumarate, malonate, succinate, and xylofuranose, which could be contributing to Fe mobilization. Interestingly, Fe starvation leads to a significant temporal increase of glutathione S-transferase at both the transcriptional level and enzymatic activity level, which indicates the involvement of glutathione in response to Fe stress in wheat roots. Taken together, our result provides new insight into the wheat response to Fe starvation at the molecular level and lays the foundation to design new strategies for the improvement of Fe nutrition in crops.

Indexed as

Iron DeficienciesPolyploidyDown-RegulationGene Expression ProfilingGene Expression Regulation, PlantGene OntologyGenes, PlantMetabolomePlant RootsRNA-SeqSeedlingsTranscription FactorsTranscription, GeneticTriticumUp-RegulationTranscription FactorsGene expressiongenome biasglutathione metabolismiron starvationtranscriptomeTriticum aestivum

Identifiers

PMID31738431
PMCPMC6859736

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.