Evidence map›Paper›PMID 31736528›Full record

ArticleComputer graphics forum : journal of the European Association for Computer Graphics2019

Cuttlefish: Color Mapping for Dynamic Multi-Scale Visualizations.

N Waldin, M Waldner, M Le Muzic, E Gröller, D S Goodsell, L Autin, A J Olson, I Viola

Abstract read
In one paragraph

Article in Computer graphics forum : journal of the European Association for Computer Graphics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Article
  2. A Concise Review of Biomolecule Visualization.Current issues in molecular biology · 2024
    Review
  3. Review
  4. Colors in the representation of biological structures.Journal of integrative bioinformatics · 2022
    Article
  5. Article
  6. Article
  7. Art and Science of the Cellular Mesoscale.Trends in biochemical sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

N WaldinTU Wien Vienna Austria.
M WaldnerTU Wien Vienna Austria.
M Le MuzicTU Wien Vienna Austria.
E GröllerTU Wien Vienna Austria.
D S GoodsellThe Scripps Research Institute La Jolla CA USA.
L AutinThe Scripps Research Institute La Jolla CA USA.
A J OlsonThe Scripps Research Institute La Jolla CA USA.
I ViolaTU Wien Vienna Austria.

Funding

Modeling and Interacting with the Visible Molecular CellR01GM120604 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI AUTIN, LUDOVIC · 2016 to 2025
$4.2M
Austrian Science Fund FWF I 2953NIGMS NIH HHS R01 GM120604
6 · The paper itself

Abstract

Visualizations of hierarchical data can often be explored interactively. For example, in geographic visualization, there are continents, which can be subdivided into countries, states, counties and cities. Similarly, in models of viruses or bacteria at the highest level are the compartments, and below that are macromolecules, secondary structures (such as α-helices), amino-acids, and on the finest level atoms. Distinguishing between items can be assisted through the use of color at all levels. However, currently, there are no hierarchical and adaptive color mapping techniques for very large multi-scale visualizations that can be explored interactively. We present a novel, multi-scale, color-mapping technique for adaptively adjusting the color scheme to the current view and scale. Color is treated as a resource and is smoothly redistributed. The distribution adjusts to the scale of the currently observed detail and maximizes the color range utilization given current viewing requirements. Thus, we ensure that the user is able to distinguish items on any level, even if the color is not constant for a particular feature. The coloring technique is demonstrated for a political map and a mesoscale structural model of HIV. The technique has been tested by users with expertise in structural biology and was overall well received.

Indexed as

I.3.3 [Computer Graphics]: Picture/Image GenerationI.3.7 [Computer Graphics]: Three‐dimensional Graphics and Realism; Color, Shading, Shadowing, and Textureillustrative visualizationmolecular visualizationmultiscale visualization

Identifiers

PMID31736528
PMCPMC6850082

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.