Evidence map›Paper›PMID 31734618›Full record

ArticleJournal of magnetic resonance (San Diego, Calif. : 1997)2020

De novo resonance assignment of the transmembrane domain of LR11/SorLA in E. coli membranes.

Xiaoyan Ding, Riqiang Fu, Fang Tian

Open access · greenAbstract read
In one paragraph

Article in Journal of magnetic resonance (San Diego, Calif. : 1997), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.4field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 8 citations in OpenAlex.

  1. Article
  2. Extensively sparseJournal of biomolecular NMR · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 1 country.

Xiaoyan DingDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, Hershey, PA 17033, USA.
Riqiang FuNational High Magnetic Field Laboratory, 1800 East Paul Dirac Dr., Tallahassee, FL 32310, USA. Electronic address: rfu@magnet.fsu.edu.
Fang TianDepartment of Biochemistry and Molecular Biology, The Pennsylvania State University, Hershey, PA 17033, USA. Electronic address: ftian@psu.edu.
Pennsylvania State University · USNational High Magnetic Field Laboratory · US

Funding

Structural and Molecular Basis of Human ATG3 Activation and Regulation for LC3 Lipid Conjugation in AutophagyR01GM127730 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI TIAN, FANG · 2019 to 2022
$1.7M
Molecular Insights into Membrane Curvature RecognitionR01GM105963 · NIGMS · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI TIAN, FANG · 2014 to 2018
$1.6M
NIGMS NIH HHS R01 GM105963NIGMS NIH HHS R01 GM127730
6 · The paper itself

Abstract

Membrane proteins perform many important cellular functions. Historically, structural studies of these proteins have been conducted in detergent preparations and synthetic lipid bilayers. More recently, magic-angle-spinning (MAS) solid-state NMR has been employed to analyze membrane proteins in native membrane environments, but resonance assignments with this technique remain challenging due to limited spectral resolution and high resonance degeneracy. To tackle this issue, we combine reverse labeling of amino acids, frequency-selective dipolar dephasing, and NMR difference spectroscopy. These methods have resulted in nearly complete resonance assignments of the transmembrane domain of human LR11 (SorLA) protein in E. coli membranes. To reduce background signals from E. coli lipids and proteins and improve spectral sensitivity, we effectively utilize amylose affinity chromatography to prepare membrane vesicles when MBP is included as a fusion partner in the expression construct.

Indexed as

Amino AcidsAmino Acid SequenceCell MembraneEscherichia coliLDL-Receptor Related ProteinsMagnetic Resonance SpectroscopyMembrane ProteinsMembrane Transport ProteinsAmino AcidsLDL-Receptor Related ProteinsMembrane ProteinsMembrane Transport ProteinsSORL1 protein, humanDifference spectroscopyFrequency-selective dipolar dephasingInner membraneMembrane proteinReverse labelingSolid-state NMR

Identifiers

PMID31734618
PMCPMC6935515
OpenAlexW2988300695

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.