Evidence map›Paper›PMID 31730621›Full record

ArticlePLoS neglected tropical diseases2019

A glance of the blood stage transcriptome of a Southeast Asian Plasmodium ovale isolate.

Awtum M Brashear, Wanlapa Roobsoong, Faiza A Siddiqui, Wang Nguitragool, Jetsumon Sattabongkot, Margarita M López-Uribe, Jun Miao, Liwang Cui

Abstract read
In one paragraph

Article in PLoS neglected tropical diseases, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
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  3. Article
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Awtum M BrashearDepartment of Entomology, Pennsylvania State University, Department of Entomology, University Park, Pennsylvania, United States of America.ORCID 0000-0001-9206-0737
Wanlapa RoobsoongMahidol Vivax Research Unit, Faculty of Tropical Medicine, Mahidol University, Thailand.ORCID 0000-0002-1789-0439
Faiza A SiddiquiDepartment of Internal Medicine, University of South Florida, Tampa, Florida, United States of America.
Wang NguitragoolDepartment of Molecular Tropical Medicine and Genetics, Faculty of Tropical Medicine, Mahidol University, Thailand.
Jetsumon SattabongkotMahidol Vivax Research Unit, Faculty of Tropical Medicine, Mahidol University, Thailand.
Margarita M López-UribeDepartment of Entomology, Pennsylvania State University, Department of Entomology, University Park, Pennsylvania, United States of America.
Jun MiaoDepartment of Internal Medicine, University of South Florida, Tampa, Florida, United States of America.
Liwang CuiDepartment of Entomology, Pennsylvania State University, Department of Entomology, University Park, Pennsylvania, United States of America.ORCID 0000-0002-8338-1974

Funding

Southeast Asia Malaria Research CenterU19AI089672 · NIAID · UNIVERSITY OF SOUTH FLORIDA · PI CUI, LIWANG · 2010 to 2023
$28.9M
Penn State Biomedical Big Data to Knowledge (B2D2K) Training ProgramT32LM012415 · NLM · PENNSYLVANIA STATE UNIVERSITY, THE · PI BROACH, JAMES R., HONAVAR, VASANT G. · 2016 to 2020
$1.2M
Transcriptomes and Proteomes of Plasmodium VivaxR21AI123934 · NIAID · PENNSYLVANIA STATE UNIVERSITY, THE · PI CUI, LIWANG · 2016 to 2017
$386k
NIAID NIH HHS R21 AI123934NIAID NIH HHS U19 AI089672NLM NIH HHS T32 LM012415
6 · The paper itself

Abstract

Plasmodium ovale accounts for a disproportionate number of travel-related malaria cases. This parasite is understudied since there is a reliance on clinical samples. We collected a P. ovale curtisi parasite isolate from a clinical case in western Thailand and performed RNA-seq analysis on the blood stage transcriptomes. Using both de novo assembly and alignment-based methods, we detected the transcripts for 6628 out of 7280 annotated genes. For those lacking evidence of expression, the vast majority belonged to the PIR and STP1 gene families. We identified new splicing patterns for over 2500 genes, and mapped at least one untranslated region for over half of all annotated genes. Our analysis also detected a notable presence of anti-sense transcripts for over 10% of P. ovale curtisi genes. This transcriptomic analysis provides new insights into the blood-stage biology of this neglected parasite.

Indexed as

Gene Expression ProfilingBloodComputational BiologyHumansMalariaPlasmodium ovaleSequence Analysis, RNAThailand

Identifiers

PMID31730621
PMCPMC6881071

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.