ArticleScientific reports2019
Identification and characterization of abundant repetitive sequences in Allium cepa.
Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.
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Who cites it
19 citing papers in PubMed, 24 citations in OpenAlex.
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- Integrated Proteomics and Metabolomics Analysis Reveals Potential Pathways Underlying Onion-Mediated Regulation of Spleen Immune Function in Liangshan Black Sheep.Veterinary sciences · 2026Article
- A Deep Dive into Allium Satellite DNAs: Expansion and Characterization of theInternational journal of molecular sciences · 2026Article
- High-resolution genome and genetic map of tetraploid Allium porrum expose pericentromeric recombination.The plant genome · 2025Article
- Fumonisin and ochratoxin-producing strains ofFrontiers in fungal biology · 2025Article
- Chromosome-level genomes of three key Allium crops and their trait evolution.Nature genetics · 2023Article
- Conservation and Global Distribution of Onion (Plants (Basel, Switzerland) · 2023Review
- Consequences of polyploidy and divergence as revealed by cytogenetic mapping of tandem repeats in African clawed frogs (European journal of wildlife research · 2023Article
- Genome-wide analysis of transposable elements and satellite DNA inFrontiers in plant science · 2023Article
- Comparative cytogenetics · 2023Review
- Development of a genome-wide marker design workflow for onions and its application in target amplicon sequencing-based genotyping.DNA research : an international journal for rapid publication of reports on genes and genomes · 2022Article
- In-Depth Satellitome Analyses of 37 Drosophila Species Illuminate Repetitive DNA Evolution in the Drosophila Genus.Genome biology and evolution · 2022Article
- The Evolution of Cytogenetic Traits inFrontiers in plant science · 2022Article
- Variation in the Number and Position of rDNA Loci Contributes to the Diversification and Speciation inFrontiers in plant science · 2022Article
- Genetic diversity and population structure in onion (Physiology and molecular biology of plants : an international journal of functional plant biology · 2021Article
- Primer Binding Site (PBS) Profiling of Genetic Diversity of Natural Populations of Endemic SpeciesBiotech (Basel (Switzerland)) · 2021Article
- Comparative Analysis of Transposable Elements in GenusInsects · 2021Article
- Simulation-based optimization of genomic selection scheme for accelerating genetic gain while preventing inbreeding depression in onion breeding.Breeding science · 2020Article
- Omics approaches inPeerJ · 2020Article
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Authors and funding
9 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Species of the genus Allium are well known for their large genomes. Allium cepa is of great economic significance. Among vegetables, it ranks second after tomato in terms of the global production value. However, there is limited genomics information available on A. cepa. In this study, we sequenced the A. cepa genome at low-coverage and annotated repetitive sequences by using a combination of next-generation sequencing (NGS) and bioinformatics tools. Nearly 92% of 16 Gb haploid onion genome were defined as repetitive sequences, organized in 162 clusters of at least 0.01 percent of the genome. Of these, a proportion representing 40.5% of the genome were further analyzed in detail to obtain an overview of representative repetitive elements present in the A. cepa genome. Few representative satellite repeats were studied by fluorescence in situ hybridization (FISH) and southern blotting. These results provided a basis for evolutionary cytogenomics within the Allium genus.
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