Evidence map›Paper›PMID 31727022›Full record

ArticleBMC genomics2019

MicroRNA-124-3p suppresses mouse lip mesenchymal cell proliferation through the regulation of genes associated with cleft lip in the mouse.

Akiko Suzuki, Hiroki Yoshioka, Dima Summakia, Neha G Desai, Goo Jun, Peilin Jia, David S Loose, Kenichi Ogata, Mona V Gajera, Zhongming Zhao and 1 more

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 27 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Review
  8. Article
  9. MicroRNAs and Gene Regulatory Networks Related to Cleft Lip and Palate.International journal of molecular sciences · 2023
    Review
  10. mEpigenetics · 2022
    Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
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  18. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Akiko SuzukiDepartment of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, 1941 East Road, BBS 4208, Houston, TX, 77054, USA.
Hiroki YoshiokaDepartment of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, 1941 East Road, BBS 4208, Houston, TX, 77054, USA.
Dima SummakiaDepartment of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, 1941 East Road, BBS 4208, Houston, TX, 77054, USA.
Neha G DesaiDepartment of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, 1941 East Road, BBS 4208, Houston, TX, 77054, USA.
Goo JunDepartment of Epidemiology, Human Genetics and Environmental Sciences, School of Public Health, The University of Texas Health Science Center at Houston, Houston, TX, USA.
Peilin JiaCenter for Precision Health, School of Biomedical Informatics, The University of Texas Health Science Center at Houston, Houston, TX, USA.
David S LooseMD Anderson Cancer Center UTHealth Graduate School of Biomedical Sciences, Houston, TX, USA.
Kenichi OgataDepartment of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, 1941 East Road, BBS 4208, Houston, TX, 77054, USA.
Mona V GajeraDepartment of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, 1941 East Road, BBS 4208, Houston, TX, 77054, USA.
Zhongming ZhaoDepartment of Epidemiology, Human Genetics and Environmental Sciences, School of Public Health, The University of Texas Health Science Center at Houston, Houston, TX, USA.
Junichi IwataDepartment of Diagnostic and Biomedical Sciences, School of Dentistry, The University of Texas Health Science Center at Houston, 1941 East Road, BBS 4208, Houston, TX, 77054, USA. Junichi.Iwata@uth.tmc.edu.ORCID http://orcid.org/0000-0003-3975-6836
The University of Texas Health Science Center at Houston · USThe University of Texas MD Anderson Cancer Center · US

Funding

Transforming dbGaP genetic and genomic data to FAIR-ready by artificial intelligence and machine learning algorithmsR01LM012806 · NLM · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Zhongming Zhao · 2017 to 2026
$3.7M
Molecular Regulatory Mechanism of Calvaria Bone Development and HomeostasisR01DE026767 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI IWATA, JUNICHI · 2017 to 2021
$1.8M
Transcripts and Functions Targeted by Non-coding RNAs in Palate DevelopmentR03DE026208 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI IWATA, JUNICHI · 2016 to 2017
$462k
Identification of microRNAs associated with cleft lipR03DE026509 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI IWATA, JUNICHI · 2017 to 2018
$462k
Molecular Regulatory Network in Frontonasal DevelopmentR03DE028340 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI IWATA, JUNICHI · 2019 to 2020
$309k
Transcriptional and Post-transcriptional Co-regulation in Lip DevelopmentR03DE027393 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI IWATA, JUNICHI, ZHAO, ZHONGMING · 2018 to 2019
$308k
Deep learning methods to predict the function of genetic variants in orofacial cleftsR03DE027711 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHAO, ZHONGMING · 2018 to 2019
$308k
Mining Genomic Data in FaceBase for Cleft GenesR03DE028103 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ZHAO, ZHONGMING · 2018 to 2019
$308k
The Maternal Genome and Risk of Structural Birth DefectsR03HD098552 · NICHD · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI JUN, GOO · 2019 to 2020
$296k
Role of WNT Signaling in Craniofacial Muscle DevelopmentR03DE024759 · NIDCR · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI IWATA, JUNICHI · 2015 to 2016
$231k
NICHD NIH HHS R03 HD098552NIDCR NIH HHS DE024759NIDCR NIH HHS DE026208NIDCR NIH HHS DE026509NIDCR NIH HHS DE026767NIDCR NIH HHS DE027393NIDCR NIH HHS DE027711NIDCR NIH HHS DE028103NIDCR NIH HHS R01 DE026767NIDCR NIH HHS R03 DE024759NIDCR NIH HHS R03 DE026208NIDCR NIH HHS R03 DE026509NIDCR NIH HHS R03 DE027393NIDCR NIH HHS R03 DE027711NIDCR NIH HHS R03 DE028103NIDCR NIH HHS R03 DE028340NLM NIH HHS R01 LM012806U.S. National Library of Medicine LM012806
6 · The paper itself

Abstract

backgroundCleft lip (CL), one of the most common congenital birth defects, shows considerable geographic and ethnic variation, with contribution of both genetic and environmental factors. Mouse genetic studies have identified several CL-associated genes. However, it remains elusive how these CL-associated genes are regulated and involved in CL. Environmental factors may regulate these genes at the post-transcriptional level through the regulation of non-coding microRNAs (miRNAs). In this study, we sought to identify miRNAs associated with CL in mice.

resultsThrough a systematic literature review and a Mouse Genome Informatics (MGI) database search, we identified 55 genes that were associated with CL in mice. Subsequent bioinformatic analysis of these genes predicted that a total of 33 miRNAs target multiple CL-associated genes, with 20 CL-associated genes being potentially regulated by multiple miRNAs. To experimentally validate miRNA function in cell proliferation, we conducted cell proliferation/viability assays for the selected five candidate miRNAs (miR-124-3p, let-7a-5p, let-7b-5p, let-7c-5p, and let-7d-5p). Overexpression of miR-124-3p, but not of the others, inhibited cell proliferation through suppression of CL-associated genes in cultured mouse embryonic lip mesenchymal cells (MELM cells) isolated from the developing mouse lip region. By contrast, miR-124-3p knockdown had no effect on MELM cell proliferation. This miRNA-gene regulatory mechanism was mostly conserved in O9-1 cells, an established cranial neural crest cell line. Expression of miR-124-3p was low in the maxillary processes at E10.5, when lip mesenchymal cells proliferate, whereas it was greatly increased at later developmental stages, suggesting that miR-124-3p expression is suppressed during the proliferation phase in normal palate development.

conclusionsOur findings indicate that upregulated miR-124-3p inhibits cell proliferation in cultured lip cells through suppression of CL-associated genes. These results will have a significant impact, not only on our knowledge about lip morphogenesis, but also on the development of clinical approaches for the diagnosis and prevention of CL.

Indexed as

Gene Expression RegulationRNA InterferenceAnimalsCell ProliferationCells, CulturedCleft LipComputational BiologyEmbryonic DevelopmentEnvironmentEpigenesis, GeneticGene Expression ProfilingLipMesenchymal Stem CellsMiceMicroRNAsMutationMicroRNAsMirn124 microRNA, mouseBioinformaticsCleft lipCraniofacial developmentGene mutationGenetic associationmicroRNASystematic review

Identifiers

PMID31727022
PMCPMC6854646
OpenAlexW2989278376

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.