Evidence map›Paper›PMID 31726967›Full record

ArticleBMC genomics2019

Proteomic and transcriptomic analyses of early and late-chronic Toxoplasma gondii infection shows novel and stage specific transcripts.

Andrew L Garfoot, Gary M Wilson, Joshua J Coon, Laura J Knoll

Abstract read
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed.

  1. Article
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  3. Dense granule proteins: key mediators ofFrontiers in medicine · 2026
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  10. Generation of MatureBio-protocol · 2024
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  11. Proteomics Applications inPathogens (Basel, Switzerland) · 2023
    Review
  12. Article
  13. Invasion ofProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  14. Unravelling the sexual developmental biology ofFrontiers in cellular and infection microbiology · 2023
    Article
  15. mSphere · 2022
    Article
  16. Article
  17. Article
  18. Article
  19. Review
  20. CircRNA and miRNA expression analysis in livers of mice withFrontiers in cellular and infection microbiology · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Andrew L GarfootDepartment of Medical Microbiology and Immunology, University of Wisconsin - Madison, Madison, WI, 53706, USA.
Gary M WilsonDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Joshua J CoonDepartment of Chemistry, University of Wisconsin-Madison, Madison, WI, 53706, USA.
Laura J KnollDepartment of Medical Microbiology and Immunology, University of Wisconsin - Madison, Madison, WI, 53706, USA. ljknoll@wisc.edu.ORCID http://orcid.org/0000-0002-9362-8088

Funding

BIOTECHNOLOGY TRAINING PROGRAMT32GM008349 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI FOX, BRIAN G · 1989 to 2019
$22.5M
TR&D 2 Metabolic Labels for Ultraplexed Protein Quantification p. 453P41GM108538 · NIGMS · UNIVERSITY OF WISCONSIN-MADISON · PI COON, JOSHUA J · 2016 to 2025
$13.1M
Microbial Pathogenesis &Host Responses Training ProgramT32AI055397 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KLEIN, BRUCE STEVEN · 2003 to 2024
$5.5M
Sexual Development of Toxoplasma in Feline Intestinal OrganoidsR01AI144016 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI KNOLL, LAURA J · 2019 to 2023
$1.9M
NIAID NIH HHS R01 AI144016NIAID NIH HHS T32 AI055397NIGMS NIH HHS P41 GM108538NIGMS NIH HHS T32 GM008349NIH HHS 1R01AI144016-01NIH HHS P41 GM108538NIH HHS T32AI55397NIH HHS T32 GM008349
6 · The paper itself

Abstract

backgroundThe protozoan pathogen Toxoplasma gondii has the unique ability to develop a chronic infection in the brain of its host by transitioning from the fast growing tachyzoite morphology to latent bradyzoite morphology. A hallmark of the bradyzoite is the development of neuronal cysts that are resilient against host immune response and current therapeutics. The bradyzoite parasites within the cyst have a carbohydrate and protein-rich wall and a slow-replication cycle, allowing them to remain hidden from the host. The intracellular, encysted lifestyle of T. gondii has made them recalcitrant to molecular analysis in vivo.

resultsHere, we detail the results from transcriptional and proteomic analyses of bradyzoite-enriched fractions isolated from mouse brains infected with T. gondii over a time course of 21 to 150 days. The enrichment procedure afforded consistent identification of over 2000 parasitic peptides from the mixed-organism sample, representing 366 T. gondii proteins at 28, 90, and 120 day timepoints. Deep sequencing of transcripts expressed during these three timepoints revealed that a subpopulation of genes that are transcriptionally expressed at a high level. Approximately one-third of these transcripts are more enriched during bradyzoite conditions compared to tachyzoites and approximately half are expressed at similar levels during each phase. The T. gondii transcript which increased the most over the course of chronic infection, sporoAMA1, shows stage specific isoform expression of the gene.

conclusionsWe have expanded the transcriptional profile of in vivo bradyzoites to 120 days post-infection and provided the first in vivo proteomic profile of T. gondii bradyzoites. The RNA sequencing depth of in vivo bradyzoite T. gondii was over 250-fold greater than previous reports and allowed us to identify low level transcripts and a novel bradyzoite-specific isoform of sporoAMA1.

Indexed as

ProteomeTranscriptomeAnimalsComputational BiologyGene Expression ProfilingGene Expression RegulationHigh-Throughput Nucleotide SequencingLife Cycle StagesMiceProteomicsToxoplasmaToxoplasmosisWorkflowProteomeBradyzoitesCystsProteomicsRNA-seqToxoplasma gondii

Identifiers

PMID31726967
PMCPMC6857164

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.