SynthesisInternational journal of molecular sciences2019
A Meta-Analysis of Comparative Transcriptomic Data Reveals a Set of Key Genes Involved in the Tolerance to Abiotic Stresses in Rice.
Synthesis in International journal of molecular sciences, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers, 2 of them syntheses that pooled it.
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Who cites it
21 citing papers in PubMed, 2 syntheses or guidelines pooled it, 45 citations in OpenAlex.
- Identification of responsive genes to multiple abiotic stresses in rice (Oryza sativa): a meta-analysis of transcriptomics data.Scientific reports · 2024Pooled it
- A Comparative Transcriptomic Meta-Analysis Revealed Conserved Key Genes and Regulatory Networks Involved in Drought Tolerance in Cereal Crops.International journal of molecular sciences · 2021Pooled it
- Comprehensive genome-wide identification and analysis of MYB transcription factors related to abiotic and biotic stress regulation in rice.Scientific reports · 2025Article
- Physiological and transcriptomic comparisons shed light on the high-temperature stress response mechanisms of Oncidium cultivars.BMC plant biology · 2025Article
- Genome-wide association mapping and transcriptional analysis uncover genetic determinants of minor tocopherols in rice seeds.Scientific reports · 2025Article
- Weighted Gene Co-Expression Network Analysis Uncovers Core Drought Responsive Genes in Pecan (Plants (Basel, Switzerland) · 2025Article
- Gene Expression Analysis for Drought Tolerance in Early Stage of Potato Plant Development.Biology · 2024Article
- Review
- Meta-QTL and ortho analysis unravels the genetic architecture and key candidate genes for cold tolerance at seedling stage in rice.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024Article
- Jacalin-related lectin 45 (OsJRL45) isolated from 'sea rice 86' enhances rice salt tolerance at the seedling and reproductive stages.BMC plant biology · 2023Article
- Seed Halopriming: A Promising Strategy to Induce Salt Tolerance in Indonesian Pigmented Rice.Plants (Basel, Switzerland) · 2023Article
- Transcriptomic analysis reveals the gene regulatory networks involved in leaf and root response to osmotic stress in tomato.Frontiers in plant science · 2023Article
- Drought and recovery in barley: key gene networks and retrotransposon response.Frontiers in plant science · 2023Article
- Integrating linkage mapping and comparative transcriptome analysis for discovering candidate genes associated with salt tolerance in rice.Frontiers in plant science · 2023Article
- Article
- Proanthocyanidins Alleviate Cadmium Stress in Industrial Hemp (Plants (Basel, Switzerland) · 2022Article
- Pretreatment with IPA ameliorates colitis in mice: Colon transcriptome and fecal 16S amplicon profiling.Frontiers in immunology · 2022Article
- Comparative transcriptome analysis of the cold resistance of the sterile rice line 33S.PloS one · 2022Article
- Transcriptome-based approaches for clarification of nutritional responses and improvement of crop production.Breeding science · 2021Article
- Preharvest UV-C Hormesis Induces Key Genes Associated With Homeostasis, Growth and Defense in Lettuce Inoculated WithFrontiers in plant science · 2021Article
Corrections and comments
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Authors and funding
8 authors at 3 institutions in 1 country.
Funding
Abstract
Several environmental factors, such as drought, salinity, and extreme temperatures, negatively affect plant growth and development, which leads to yield losses. The tolerance or sensitivity to abiotic stressors are the expression of a complex machinery involving molecular, biochemical, and physiological mechanisms. Here, a meta-analysis on previously published RNA-Seq data was performed to identify the genes conferring tolerance to chilling, osmotic, and salt stresses, by comparing the transcriptomic changes between tolerant and susceptible rice genotypes. Several genes encoding transcription factors (TFs) were identified, suggesting that abiotic stress tolerance involves upstream regulatory pathways. A gene co-expression network defined the metabolic and signalling pathways with a prominent role in the differentiation between tolerance and susceptibility: (i) the regulation of endogenous abscisic acid (ABA) levels, through the modulation of genes that are related to its biosynthesis/catabolism, (ii) the signalling pathways mediated by ABA and jasmonic acid, (iii) the activity of the "Drought and Salt Tolerance" TF, involved in the negative regulation of stomatal closure, and (iv) the regulation of flavonoid biosynthesis by specific MYB TFs. The identified genes represent putative key players for conferring tolerance to a broad range of abiotic stresses in rice; a fine-tuning of their expression seems to be crucial for rice plants to cope with environmental cues.
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Registered trials
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