Evidence map›Paper›PMID 31724945›Full record

ArticleeLife2019

Formation of a β-barrel membrane protein is catalyzed by the interior surface of the assembly machine protein BamA.

James Lee, David Tomasek, Thiago Ma Santos, Mary D May, Ina Meuskens, Daniel Kahne

Open access · goldAbstract read
In one paragraph

Article in eLife, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 47 papers.

0numbers the graph read from it
0cells of the map it votes in
47citing papers in PubMed
7.0field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

47 citing papers in PubMed, 67 citations in OpenAlex.

  1. Review
  2. A mechanism for substrate quality control in outer membrane protein assembly.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
  4. Structures of folding intermediates on BAM show diverse substrates fold by a conserved mechanism.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Review
  11. Native β-barrel substrates pass through two shared intermediates during folding on the BAM complex.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  12. ACS omega · 2024
    Article
  13. Total Synthesis of Dynobactin A.Journal of the American Chemical Society · 2024
    Article
  14. Review
  15. Article
  16. The Name Is Barrel, β-Barrel.Methods in molecular biology (Clifton, N.J.) · 2024
    Article
  17. Article
  18. Article
  19. Review
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

James LeeDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, United States.ORCID 0000-0002-8551-0258
David Tomasek *Department of Molecular and Cellular Biology, Harvard University, Cambridge, United States.ORCID 0000-0003-1212-4601
Thiago Ma Santos *Department of Chemistry and Chemical Biology, Harvard University, Cambridge, United States.ORCID 0000-0002-0648-6078
Mary D May *Department of Chemistry and Chemical Biology, Harvard University, Cambridge, United States.ORCID 0000-0002-9484-8621
Ina MeuskensDepartment of Chemistry and Chemical Biology, Harvard University, Cambridge, United States.ORCID 0000-0002-5103-1566
Daniel KahneDepartment of Molecular and Cellular Biology, Harvard University, Cambridge, United States.ORCID 0000-0002-8296-1424
Harvard University · US

Funding

Outer Membrane Biogenesis: New Antibiotic TargetsR01AI081059 · NIAID · HARVARD UNIVERSITY · PI Daniel Kahne · 2009 to 2026
$9.5M
Bacteriology PhD Training ProgramT32AI132120 · NIAID · HARVARD MEDICAL SCHOOL · PI RUDNER, DAVID Z · 2017 to 2021
$1.7M
Mapping the pathway of membrane β-barrel protein folding by the Bam complex.F31GM116210 · NIGMS · HARVARD UNIVERSITY · PI LEE, JAMES · 2016 to 2017
$63k
Howard Hughes Medical Institute Hanna H Gray Postdoctoral FellowshipNational Institute of Allergy and Infectious Diseases AI081059National Institute of Allergy and Infectious Diseases T32AI132120NIAID NIH HHS R01 AI081059NIAID NIH HHS T32 AI132120NIGMS NIH HHS F31GM116210
6 · The paper itself

Abstract

The β-barrel assembly machine (Bam) complex in Gram-negative bacteria and its counterparts in mitochondria and chloroplasts fold and insert outer membrane β-barrel proteins. BamA, an essential component of the complex, is itself a β-barrel and is proposed to play a central role in assembling other barrel substrates. Here, we map the path of substrate insertion by the Bam complex using site-specific crosslinking to understand the molecular mechanisms that control β-barrel folding and release. We find that the C-terminal strand of the substrate is stably held by BamA and that the N-terminal strands of the substrate are assembled inside the BamA β-barrel. Importantly, we identify contacts between the assembling β-sheet and the BamA interior surface that determine the rate of substrate folding. Our results support a model in which the interior wall of BamA acts as a chaperone to catalyze β-barrel assembly.

Indexed as

Amino Acid MotifsBacterial Outer Membrane ProteinsBinding SitesCell MembraneCloning, MolecularCrystallography, X-RayEscherichia coliEscherichia coli ProteinsGene ExpressionGenetic VectorsModels, MolecularMutationProtein BindingProtein Conformation, beta-StrandProtein FoldingProtein Interaction Domains and MotifsBacterial Outer Membrane ProteinsBamA protein, E coliEscherichia coli ProteinsLptD protein, E coliRecombinant ProteinsBam complexbeta barrelbiochemistrychemical biologyE. coligram-negative bacteriainfectious diseasemembrane protein foldingmicrobiologyouter membrane

Identifiers

PMID31724945
PMCPMC6887485
OpenAlexW2983772074

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.