Evidence map›Paper›PMID 31724732›Full record

ArticleNucleic acids research2020

Nuclear Ccr4-Not mediates the degradation of telomeric and transposon transcripts at chromatin in the Drosophila germline.

Maria Kordyukova, Olesya Sokolova, Valeriya Morgunova, Sergei Ryazansky, Natalia Akulenko, Sergey Glukhov, Alla Kalmykova

Open access · goldAbstract read
In one paragraph

Article in Nucleic acids research, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.9field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 33 citations in OpenAlex.

  1. Review
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  9. Telomere Checkpoint in Development and Aging.International journal of molecular sciences · 2023
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  20. Heterochromatin as an Important Driver of Genome Organization.Frontiers in cell and developmental biology · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Maria KordyukovaInstitute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia.
Olesya SokolovaInstitute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia.
Valeriya MorgunovaInstitute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia.
Sergei RyazanskyInstitute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia.
Natalia AkulenkoInstitute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia.
Sergey GlukhovInstitute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia.
Alla KalmykovaInstitute of Molecular Genetics, Russian Academy of Sciences, Moscow 123182, Russia.
Institute of Molecular Genetics · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Ccr4-Not is a highly conserved complex involved in cotranscriptional RNA surveillance pathways in yeast. In Drosophila, Ccr4-Not is linked to the translational repression of miRNA targets and the posttranscriptional control of maternal mRNAs during oogenesis and embryonic development. Here, we describe a new role for the Ccr4-Not complex in nuclear RNA metabolism in the Drosophila germline. Ccr4 depletion results in the accumulation of transposable and telomeric repeat transcripts in the fraction of chromatin-associated RNA; however, it does not affect small RNA levels or the heterochromatin state of the target loci. Nuclear targets of Ccr4 mainly comprise active full-length transposable elements (TEs) and telomeric and subtelomeric repeats. Moreover, Ccr4-Not foci localize at telomeres in a Piwi-dependent manner, suggesting a functional relationship between these pathways. Indeed, we detected interactions between the components of the Ccr4-Not complex and piRNA machinery, which indicates that these pathways cooperate in the nucleus to recognize and degrade TE transcripts at transcription sites. These data reveal a new layer of transposon control in the germline, which is critical for the maintenance of genome integrity.

Indexed as

Genome, InsectAnimalsChromatinDNA Transposable ElementsDrosophila melanogasterDrosophila ProteinsEmbryonic DevelopmentEmbryo, NonmammalianEndopeptidasesFemaleGene Expression Regulation, DevelopmentalOogenesisOvumRibonucleasesRNA, MessengerRNA, Small InterferingCCR4 protein, DrosophilaChromatinDNA Transposable ElementsDrosophila ProteinsEndopeptidasesnot protein, DrosophilaRibonucleasesRNA, MessengerRNA, Small Interfering

Identifiers

PMID31724732
PMCPMC7145718
OpenAlexW2986982195

What OpenQuestion holds

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LicenceCC BY-NC
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.