Evidence map›Paper›PMID 31723179›Full record

ArticleScientific reports2019

The β-oxidation pathway is downregulated during diapause termination in Calanus copepods.

Elise Skottene, Ann M Tarrant, Anders J Olsen, Dag Altin, Mari-Ann Østensen, Bjørn Henrik Hansen, Marvin Choquet, Bjørn M Jenssen, Rolf Erik Olsen

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.3field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Elise SkotteneDepartment of Biology, NTNU, Trondheim, Norway. elise.skottene@ntnu.no.ORCID http://orcid.org/0000-0003-3926-5252
Ann M TarrantWoods Hole Oceanographic Institution, Woods Hole, Massachusetts, USA.ORCID http://orcid.org/0000-0002-1909-7899
Anders J OlsenDepartment of Biology, NTNU, Trondheim, Norway.
Dag AltinBioTrix, Trondheim, Norway.
Mari-Ann ØstensenDepartment of Biology, NTNU, Trondheim, Norway.
Bjørn Henrik HansenSINTEF Ocean AS, Environment and New Resources, Trondheim, Norway.
Marvin ChoquetFaculty of Biosciences and Aquaculture, Nord University, Bodø, Norway.ORCID http://orcid.org/0000-0001-6719-2332
Bjørn M JenssenDepartment of Biology, NTNU, Trondheim, Norway.ORCID http://orcid.org/0000-0002-7042-2191
Rolf Erik OlsenDepartment of Biology, NTNU, Trondheim, Norway.
Nord University · NONTNU Samfunnsforskning · NOSINTEF · NOWoods Hole Oceanographic Institution · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Calanus copepods are keystone species in marine ecosystems, mainly due to their high lipid content, which is a nutritious food source for e.g. juvenile fish. Accumulated lipids are catabolized to meet energy requirements during dormancy (diapause), which occurs during the last copepodite stage (C5). The current knowledge of lipid degradation pathways during diapause termination is limited. We characterized changes in lipid fullness and generated transcriptional profiles in C5s during termination of diapause and progression towards adulthood. Lipid fullness of C5s declined linearly during developmental progression, but more β-oxidation genes were upregulated in early C5s compared to late C5s and adults. We identified four possible master regulators of energy metabolism, which all were generally upregulated in early C5s, compared to late C5s and adults. We discovered that one of two enzymes in the carnitine shuttle is absent from the calanoid copepod lineage. Based on the geographical location of the sampling site, the field-samples were initially presumed to consist of C. finmarchicus. However, the identification of C. glacialis in some samples underlines the need for performing molecular analyses to reliably identify Calanus species. Our findings contributes to a better understanding of molecular events occurring during diapause and diapause termination in calanoid copepods.

Indexed as

DiapauseEcosystemEnergy MetabolismAnimalsCopepodaDown-RegulationLipidsOxidation-ReductionLipids

Identifiers

PMID31723179
PMCPMC6853931
OpenAlexW2983532626

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.