Evidence map›Paper›PMID 31723142›Full record

ArticleNature communications2019

Clonal selection confers distinct evolutionary trajectories in BRAF-driven cancers.

Priyanka Gopal, Elif Irem Sarihan, Eui Kyu Chie, Gwendolyn Kuzmishin, Semihcan Doken, Nathan A Pennell, Daniel P Raymond, Sudish C Murthy, Usman Ahmad, Siva Raja and 6 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.1field-weighted citation impact, top 22% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Review
  6. International journal of breast cancer · 2024
    Article
  7. Article
  8. Article
  9. The Mutational Landscape of Cancer's Vulnerability to Ionizing Radiation.Clinical cancer research : an official journal of the American Association for Cancer Research · 2022
    Article
  10. Article
  11. Review
  12. BRAF Gene and Melanoma: Back to the Future.International journal of molecular sciences · 2021
    Review
  13. Review
  14. Article
  15. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 3 institutions in 3 countries.

Priyanka Gopal2111 East 96th St/NE-6, Department of Translational Hematology Oncology Research, Cleveland Clinic, Cleveland, OH, 44106, USA.ORCID http://orcid.org/0000-0002-4703-8255
Elif Irem Sarihan2111 East 96th St/NE-6, Department of Translational Hematology Oncology Research, Cleveland Clinic, Cleveland, OH, 44106, USA.
Eui Kyu Chie101, Daehak-Ro, Jongno-Gu, Department of Radiation Oncology, Seoul National University College of Medicine, Seoul, Korea, 110-774, USA.ORCID http://orcid.org/0000-0003-2027-7472
Gwendolyn Kuzmishin2111 East 96th St/NE-6, Department of Translational Hematology Oncology Research, Cleveland Clinic, Cleveland, OH, 44106, USA.
Semihcan Doken2111 East 96th St/NE-6, Department of Translational Hematology Oncology Research, Cleveland Clinic, Cleveland, OH, 44106, USA.
Nathan A Pennell10201 Carnegie Ave/CA-5, Department of Hematology and Medical Oncology, Cleveland Clinic, Cleveland, OH, 44195, USA.
Daniel P Raymond9500 Euclid Avenue/J4-1, Department of Thoracic and Cardiovascular Surgery, Cleveland Clinic, Cleveland, OH, 44195, USA.
Sudish C Murthy9500 Euclid Avenue/J4-1, Department of Thoracic and Cardiovascular Surgery, Cleveland Clinic, Cleveland, OH, 44195, USA.ORCID http://orcid.org/0000-0002-1543-2872
Usman Ahmad9500 Euclid Avenue/J4-1, Department of Thoracic and Cardiovascular Surgery, Cleveland Clinic, Cleveland, OH, 44195, USA.
Siva Raja9500 Euclid Avenue/J4-1, Department of Thoracic and Cardiovascular Surgery, Cleveland Clinic, Cleveland, OH, 44195, USA.
Francisco Almeida9500 Euclid Avenue/M2-141, Department of Pulmonary Medicine, Cleveland Clinic, Cleveland, OH, 44195, USA.
Sonali Sethi9500 Euclid Avenue/M2-141, Department of Pulmonary Medicine, Cleveland Clinic, Cleveland, OH, 44195, USA.
Thomas R Gildea9500 Euclid Avenue/M2-141, Department of Pulmonary Medicine, Cleveland Clinic, Cleveland, OH, 44195, USA.
Craig D Peacock2111 East 96th St/NE-6, Department of Translational Hematology Oncology Research, Cleveland Clinic, Cleveland, OH, 44106, USA.
Drew J Adams2109 Adelbert Road/BRB, Case Western Reserve University, Department of Genetics, Cleveland, OH, 44106, USA.
Mohamed E Abazeed2111 East 96th St/NE-6, Department of Translational Hematology Oncology Research, Cleveland Clinic, Cleveland, OH, 44106, USA. abazeem@ccf.org.
Cleveland Clinic · USCase Western Reserve University · USSeoul National University · KR

Funding

Institutional Career Development CoreKL2TR002547 · NCATS · CASE WESTERN RESERVE UNIVERSITY · PI DWEIK, RAED A. · 2018 to 2022
$7.7M
A biomarker-driven strategy to guide the use of radiotherapy in non-small cell lung cancerR37CA222294 · NCI · NORTHWESTERN UNIVERSITY AT CHICAGO · PI ABAZEED, MOHAMED E. · 2018 to 2024
$2.5M
NCATS NIH HHS KL2 TR002547NCI NIH HHS R37 CA222294
6 · The paper itself

Abstract

Molecular determinants governing the evolution of tumor subclones toward phylogenetic branches or fixation remain unknown. Using sequencing data, we model the propagation and selection of clones expressing distinct categories of BRAF mutations to estimate their evolutionary trajectories. We show that strongly activating BRAF mutations demonstrate hard sweep dynamics, whereas mutations with less pronounced activation of the BRAF signaling pathway confer soft sweeps or are subclonal. We use clonal reconstructions to estimate the strength of "driver" selection in individual tumors. Using tumors cells and human-derived murine xenografts, we show that tumor sweep dynamics can significantly affect responses to targeted inhibitors of BRAF/MEK or DNA damaging agents. Our study uncovers patterns of distinct BRAF clonal evolutionary dynamics and nominates therapeutic strategies based on the identity of the BRAF mutation and its clonal composition.

Indexed as

Adenocarcinoma of LungAnimalsCell Line, TumorCell SurvivalClonal EvolutionClone CellsDNA DamageGene DosageGenetic LociHumansMiceMitogen-Activated Protein Kinase KinasesMutationNeoplasmsPhenotypeProtein Kinase InhibitorsMitogen-Activated Protein Kinase KinasesProtein Kinase InhibitorsProto-Oncogene Proteins B-raf

Identifiers

PMID31723142
PMCPMC6853924
OpenAlexW2985762708

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.