Evidence map›Paper›PMID 31723135›Full record

ArticleNature communications2019

Multisite phosphorylation drives phenotypic variation in (p)ppGpp synthetase-dependent antibiotic tolerance.

Elizabeth A Libby, Shlomi Reuveni, Jonathan Dworkin

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
4.5field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 39 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Microbiology spectrum · 2023
    Article
  8. Review
  9. Article
  10. Review
  11. Review
  12. Article
  13. Review
  14. Article
  15. Article
  16. Article
  17. Article
  18. Article
  19. (p)ppGpp and Its Role in Bacterial Persistence: New Challenges.Antimicrobial agents and chemotherapy · 2020
    Review
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Elizabeth A LibbyDepartment of Microbiology and Immunology, College of Physicians and Surgeons, Columbia University, New York, NY, 10032, USA.ORCID http://orcid.org/0000-0003-2374-1015
Shlomi ReuveniDepartment of Systems Biology, Harvard Medical School, Boston, MA, 02115, USA.
Jonathan DworkinDepartment of Microbiology and Immunology, College of Physicians and Surgeons, Columbia University, New York, NY, 10032, USA. jonathan.dworkin@columbia.edu.
Harvard University · USColumbia University · US

Funding

Regulation of Protein Synthesis in Bacteria by Ser/Thr PhosphorylationR01GM114213 · NIGMS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DWORKIN, JONATHAN · 2015 to 2018
$1.4M
Stochastic Partitioning and Degradation of MacromoleculesR01GM095784 · NIGMS · HARVARD MEDICAL SCHOOL · PI PAULSSON, JOHAN · 2011 to 2014
$1.3M
Physiological responses to cell wall-active antibiotics in a Gram-positive bacteriumR21AI135427 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI DWORKIN, JONATHAN · 2018 to 2019
$440k
NIAID NIH HHS R21 AI135427NIGMS NIH HHS R01 GM095784NIGMS NIH HHS R01 GM114213
6 · The paper itself

Abstract

Isogenic populations of cells exhibit phenotypic variability that has specific physiological consequences. Individual bacteria within a population can differ in antibiotic tolerance, but whether this variability can be regulated or is generally an unavoidable consequence of stochastic fluctuations is unclear. Here we report that a gene encoding a bacterial (p)ppGpp synthetase in Bacillus subtilis, sasA, exhibits high levels of extrinsic noise in expression. We find that sasA is regulated by multisite phosphorylation of the transcription factor WalR, mediated by a Ser/Thr kinase-phosphatase pair PrkC/PrpC, and a Histidine kinase WalK of a two-component system. This regulatory intersection is crucial for controlling the appearance of outliers; rare cells with unusually high levels of sasA expression, having increased antibiotic tolerance. We create a predictive model demonstrating that the probability of a given cell surviving antibiotic treatment increases with sasA expression. Therefore, multisite phosphorylation can be used to strongly regulate variability in antibiotic tolerance.

Indexed as

Anti-Bacterial AgentsBacillus subtilisBacterial ProteinsDrug Resistance, MicrobialGene Expression Regulation, BacterialLigasesPhenotypePhosphorylationPhosphothreonineProtein Kinase CAnti-Bacterial AgentsBacterial Proteinsguanosine 3',5'-polyphosphate synthetasesLigasesPhosphothreonineProtein Kinase C

Identifiers

PMID31723135
PMCPMC6853874
OpenAlexW2985956355

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.