Evidence map›Paper›PMID 31723026›Full record

ArticleJournal of virology2020

HIV-1 Tat Interacts with a Kaposi's Sarcoma-Associated Herpesvirus Reactivation-Upregulated Antiangiogenic Long Noncoding RNA, LINC00313, and Antagonizes Its Function.

Wan-Shan Yang, Ting-Yu Lin, Lung Chang, Wayne W Yeh, Shih-Ching Huang, Tung-Ying Chen, Yi-Ta Hsieh, Szu-Ting Chen, Wan-Chun Li, Chin-Chen Pan and 4 more

Open access · hybridAbstract read
In one paragraph

Article in Journal of virology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed, 1 pooled it
0.9field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 1 synthesis or guideline pooled it, 20 citations in OpenAlex.

  1. Pooled it
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  12. Epigenetic Changes and Functions in Pneumoconiosis.Oxidative medicine and cellular longevity · 2022
    Review
  13. SARS-CoV-2, Cardiovascular Diseases, and Noncoding RNAs: A Connected Triad.International journal of molecular sciences · 2021
    Review
  14. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 7 institutions in 2 countries.

Wan-Shan Yang *Institute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan.
Ting-Yu Lin *Institute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan.
Lung ChangInstitute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan.
Wayne W YehInstitute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan.
Shih-Ching HuangInstitute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan.
Tung-Ying ChenDepartment of Pathology, MacKay Memorial Hospital, Taipei, Taiwan.
Yi-Ta HsiehInstitute of Oral Biology, School of Dentistry, National Yang-Ming University, Taipei, Taiwan.
Szu-Ting ChenInstitute of Clinical Medicine, National Yang-Ming University, Taipei, Taiwan.
Wan-Chun LiInstitute of Oral Biology, School of Dentistry, National Yang-Ming University, Taipei, Taiwan.
Chin-Chen PanDepartment of Pathology, Taipei Veterans General Hospital, National Yang-Ming University, Taipei, Taiwan.
Mel CampbellUC Davis Cancer Center, University of California, Davis, California, USA.
Chia-Hung YenCenter for Infectious Disease and Cancer Research, Kaohsiung Medical University, Kaohsiung, Taiwan.
Yi-Ming Arthur ChenMaster Program in Clinical Pharmacogenomics and Pharmacoproteomics, College of Pharmacy, Taipei Medical University, Taipei, Taiwan.
Pei-Ching ChangInstitute of Microbiology and Immunology, National Yang-Ming University, Taipei, Taiwan pcchang@ym.edu.tw.
National Yang Ming Chiao Tung University · TWKaohsiung Medical University · TWNational Yang Ming Chiao Tung University · TWMackay Medical College · TWMackay Memorial Hospital · TWTaipei Medical University · TWUniversity of California, Davis · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Kaposi's sarcoma-associated herpesvirus (KSHV) is the causative agent of Kaposi's sarcoma (KS), an AIDS-defining cancer with abnormal angiogenesis. The high incidence of KS in human immunodeficiency virus (HIV)-infected AIDS patients has been ascribed to an interaction between HIV type 1 (HIV-1) and KSHV, focusing on secretory proteins. The HIV-1 secreted protein HIV Tat has been found to synergize with KSHV lytic proteins to induce angiogenesis. However, the impact and underlying mechanisms of HIV Tat in KSHV-infected endothelial cells undergoing viral lytic reactivation remain unclear. Here, we identified LINC00313 as a novel KSHV reactivation-activated long noncoding RNA (lncRNA) that interacts with HIV Tat. We found that LINC00313 overexpression inhibits cell migration, invasion, and tube formation, and this suppressive effect was relieved by HIV Tat. In addition, LINC00313 bound to polycomb repressive complex 2 (PRC2) complex components, and this interaction was disrupted by HIV Tat, suggesting that LINC00313 may mediate transcription repression through recruitment of PRC2 and that HIV Tat alleviates repression through disruption of this association. This notion was further supported by bioinformatics analysis of transcriptome profiles in LINC00313 overexpression combined with HIV Tat treatment. Ingenuity Pathway Analysis (IPA) showed that LINC00313 overexpression negatively regulates cell movement and migration pathways, and enrichment of these pathways was absent in the presence of HIV Tat. Collectively, our results illustrate that an angiogenic repressive lncRNA, LINC00313, which is upregulated during KSHV reactivation, interacts with HIV Tat to promote endothelial cell motility. These results demonstrate that an lncRNA serves as a novel connector in HIV-KSHV interactions.

Indexed as

CoinfectionEndothelial CellsGene Expression ProfilingHerpesvirus 8, HumanHIV-1HIV InfectionsHumansPolycomb Repressive Complex 2RNA, Long NoncodingSarcoma, Kapositat Gene Products, Human Immunodeficiency VirusTranscriptional ActivationUp-RegulationVirus ActivationVirus ReplicationPolycomb Repressive Complex 2RNA, Long Noncodingtat Gene Products, Human Immunodeficiency VirusHIVHIV-1 Tathuman immunodeficiency virusKaposi’s sarcoma-associated herpesvirusKSHVlncRNAlong noncoding RNA

Identifiers

PMID31723026
PMCPMC7000985
OpenAlexW2984218941

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.