Evidence map›Paper›PMID 31722724›Full record

ArticleEpigenetics & chromatin2019

Folate deficiency induced H2A ubiquitination to lead to downregulated expression of genes involved in neural tube defects.

Pei Pei, Xiyue Cheng, Juan Yu, Jinying Shen, Xue Li, Jianxin Wu, Shan Wang, Ting Zhang

Open access · goldAbstract read
In one paragraph

Article in Epigenetics & chromatin, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
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  8. Review
  9. Neural Tube Defects and Folate Deficiency: Is DNA Repair Defective?International journal of molecular sciences · 2023
    Review
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  12. Review
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  16. Efficacy of microsurgery for congenital neural tube defects in newborns.American journal of translational research · 2022
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  18. Review
  19. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 5 institutions in 1 country.

Pei PeiBeijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, 100020, China.
Xiyue ChengBeijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, 100020, China.
Juan YuDepartment of Biochemistry and Molecular Biology, Shanxi Medical University, Taiyuan, 030001, Shanxi, China.
Jinying ShenSchool of Engineering Technology, Beijing Normal University, Zhuhai, 519085, Guangdong, China.
Xue LiSchool of Clinical Medical, Weifang Medical University, Weifang, 261053, Shandong, China.
Jianxin WuBeijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, 100020, China.
Shan WangBeijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, 100020, China. wsaquarius@sina.com.
Ting ZhangBeijing Municipal Key Laboratory of Child Development and Nutriomics, Capital Institute of Pediatrics, Beijing, 100020, China. zhangtingcv@126.com.
Capital Institute of Pediatrics · CNBeijing Normal University · CNPeking Union Medical College Hospital · CNShanxi Medical University · CNWeifang Medical University · CN

Funding

Beijing municipal program of medical research Grant No. 2016-04CAMS initiative for Innovative Medicine CAMS-I2M-1-008The National Natural Science Foundation Projects 31571324The National Natural Science Foundation Projects 81771584
6 · The paper itself

Abstract

backgroundNeural tube defects (NTDs) are common congenital malformations resulting in failure of the neural tube closure during early embryonic development. Although it is known that maternal folate deficiency increases the risk of NTDs, the mechanism remains elusive.

resultsHerein, we report that histone H2A monoubiquitination (H2AK119ub1) plays a role in neural tube closure. We found that the folate antagonist methotrexate induced H2AK119ub1 in mouse embryonic stem cells. We demonstrated that an increase in H2AK119ub1 downregulated expression of the neural tube closure-related genes Cdx2, Nes, Pax6, and Gata4 in mouse embryonic stem cells under folate deficiency conditions. We also determined that the E3 ligase Mdm2 was responsible for the methotrexate-induced increase in H2AK119ub1 and downregulation of neural tube closure-related genes. Surprisingly, we found that Mdm2 is required for MTX-induced H2A ubiquitination and is recruited to the sites of DSB, which is dependent on DNA damage signaling kinase ATM. Furthermore, folic acid supplementation restored H2AK119ub1 binding to neural tube closure-related genes. Downregulation of these genes was also observed in both brain tissue of mouse and human NTD cases, and high levels of H2AK119ub1 were found in the corresponding NTDs samples with their maternal serum folate under low levels. Pearson correlation analysis showed a significant negative correlation between expression of the neural precursor genes and H2AK119ub1.

conclusionOur results indicate that folate deficiency contributes to the onset of NTDs by altering H2AK119ub1 and subsequently affecting expression of neural tube closure-related genes. This may be a potential risk factor for NTDs in response to folate deficiency.

Indexed as

Down-RegulationAnimalsAtaxia Telangiectasia Mutated ProteinsCDX2 Transcription FactorDNA DamageEmbryonic DevelopmentEmbryonic Stem CellsFolic AcidHistonesMethotrexateMiceMice, Inbred C57BLNeural Tube DefectsPAX6 Transcription FactorProtein BindingProto-Oncogene Proteins c-mdm2Ataxia Telangiectasia Mutated ProteinsAtm protein, mouseCdx2 protein, mouseCDX2 Transcription FactorFolic AcidHistonesMdm2 protein, mouseMethotrexatePax6 protein, mousePAX6 Transcription FactorProto-Oncogene Proteins c-mdm2RNA, Small InterferingFolate antagonist methotrexateHistone ubiquitinationMouse double minute 2 homolog (Mdm2, MDM2)Neural tube closure-related genesNeural tube defect

Identifiers

PMID31722724
PMCPMC6852770
OpenAlexW2984179060

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.