Evidence map›Paper›PMID 31722667›Full record

ArticleBMC plant biology2019

Transcriptomic and evolutionary analysis of the mechanisms by which P. argentatum, a rubber producing perennial, responds to drought.

Andrew D L Nelson, Grisel Ponciano, Colleen McMahan, Daniel C Ilut, N Ace Pugh, Diaa Eldin Elshikha, Douglas J Hunsaker, Duke Pauli

Abstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Metabolomics reveal drought-stress responses in guayule, a semi-arid rubber crop.Metabolomics : Official journal of the Metabolomic Society · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Andrew D L NelsonSchool of Plant Sciences, University of Arizona, Tucson, AZ, 85721-0036, USA. andrew.d.l.nelson@gmail.com.ORCID http://orcid.org/0000-0001-9896-1739
Grisel PoncianoWestern Regional Research Center, Agricultural Research Service, United States Department of Agriculture, Albany, California, 94710, USA.
Colleen McMahanWestern Regional Research Center, Agricultural Research Service, United States Department of Agriculture, Albany, California, 94710, USA.
Daniel C IlutPlant Breeding and Genetics Section, School of Integrative Plant Science, Cornell University, Ithaca, NY, 14853, USA.
N Ace PughSchool of Plant Sciences, University of Arizona, Tucson, AZ, 85721-0036, USA.
Diaa Eldin ElshikhaBiosystems Engineering, University of Arizona, Tucson, AZ, 85721, USA.
Douglas J HunsakerUSDA-ARS, Arid Land Agricultural Research Center, Maricopa, AZ, 85138, USA.
Duke PauliSchool of Plant Sciences, University of Arizona, Tucson, AZ, 85721-0036, USA. dukepauli@email.arizona.edu.

Funding

Division of Integrative Organismal Systems IOS-1758532National Institute of Food and Agriculture 2012-10006-19391
6 · The paper itself

Abstract

backgroundGuayule (Parthenium argentatum Gray) is a drought tolerant, rubber producing perennial shrub native to northern Mexico and the US Southwest. Hevea brasiliensis, currently the world's only source of natural rubber, is grown as a monoculture, leaving it vulnerable to both biotic and abiotic stressors. Isolation of rubber from guayule occurs by mechanical harvesting of the entire plant. It has been reported that environmental conditions leading up to harvest have a profound impact on rubber yield. The link between rubber biosynthesis and drought, a common environmental condition in guayule's native habitat, is currently unclear.

resultsWe took a transcriptomic and comparative genomic approach to determine how drought impacts rubber biosynthesis in guayule. We compared transcriptional profiles of stem tissue, the location of guayule rubber biosynthesis, collected from field-grown plants subjected to water-deficit (drought) and well-watered (control) conditions. Plants subjected to the imposed drought conditions displayed an increase in production of transcripts associated with defense responses and water homeostasis, and a decrease in transcripts associated with rubber biosynthesis. An evolutionary and comparative analysis of stress-response transcripts suggests that more anciently duplicated transcripts shared among the Asteraceae, rather than recently derived duplicates, are contributing to the drought response observed in guayule. In addition, we identified several deeply conserved long non-coding RNAs (lncRNAs) containing microRNA binding motifs. One lncRNA in particular, with origins at the base of Asteraceae, may be regulating the vegetative to reproductive transition observed in water-stressed guayule by acting as a miRNA sponge for miR166.

conclusionsThese data represent the first genomic analyses of how guayule responds to drought like conditions in agricultural production settings. We identified an inverse relationship between stress-responsive transcripts and those associated with precursor pathways to rubber biosynthesis suggesting a physiological trade-off between maintaining homeostasis and plant productivity. We also identify a number of regulators of abiotic responses, including transcription factors and lncRNAs, that are strong candidates for future projects aimed at modulating rubber biosynthesis under water-limiting conditions common to guayules' native production environment.

Indexed as

DroughtsAdaptation, PhysiologicalAsteraceaeBiological EvolutionRubberTranscriptomeWaterRubberWaterComparative genomicDrought stressGuayulelncRNAsRubber biosynthesisTranscriptome

Identifiers

PMID31722667
PMCPMC6854645

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.