Evidence map›Paper›PMID 31721021›Full record

ArticleMolecular biology reports2020

Replication of GWAS identifies RTEL1, CDKN2A/B, and PHLDB1 SNPs as risk factors in Portuguese gliomas patients.

Marta Viana-Pereira, Daniel Antunes Moreno, Paulo Linhares, Júlia Amorim, Rui Nabiço, Sandra Costa, Rui Vaz, Rui Manuel Reis

Abstract read
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In one paragraph

Article in Molecular biology reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed, 2 pooled it
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 2 syntheses or guidelines pooled it, 13 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Association ofGynecology and pelvic medicine · 2025
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  8. Brain Acetyl-CoA Production and Phosphorylation of Cytoskeletal Proteins Are Targets of CYP46A1 Activity Modulation and Altered Sterol Flux.Neurotherapeutics : the journal of the American Society for Experimental NeuroTherapeutics · 2021
    Article
  9. Association ofPharmacogenomics and personalized medicine · 2021
    Article
  10. PHLD Class Proteins: A Family of New Players in the p53 Network.International journal of molecular sciences · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Marta Viana-PereiraSchool of Medicine, Life and Health Sciences Research Institute (ICVS), University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal.ORCID http://orcid.org/0000-0003-3087-0624
Daniel Antunes MorenoBarretos Cancer Hospital, Molecular Oncology Research Center, Barretos, SP, Brazil.ORCID http://orcid.org/0000-0002-0764-447X
Paulo LinharesDepartment of Neurosurgery, Hospital S. João, Porto, Portugal.ORCID http://orcid.org/0000-0002-0888-3325
Júlia AmorimDepartment of Oncology, Hospital de Braga, Braga, Portugal.ORCID http://orcid.org/0000-0002-8692-7936
Rui NabiçoDepartment of Oncology, Hospital de Braga, Braga, Portugal.
Sandra CostaSchool of Medicine, Life and Health Sciences Research Institute (ICVS), University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal.ORCID http://orcid.org/0000-0001-6795-4245
Rui VazDepartment of Neurosurgery, Hospital S. João, Porto, Portugal.ORCID http://orcid.org/0000-0001-7527-8187
Rui Manuel ReisSchool of Medicine, Life and Health Sciences Research Institute (ICVS), University of Minho, Campus de Gualtar, 4710-057, Braga, Portugal. rreis@med.uminho.pt.ORCID http://orcid.org/0000-0002-9639-7940
Hospital Braga · PTHospital de Câncer de Barretos · BRUniversidade do Porto · PTUniversity of Minho · PT

Funding

Fundação para a Ciência e Tecnologia (FCT), Portugal Grant PTDC/SAU- ONC/115513/2009_FCOMP-01-0124-FEDER-015949
6 · The paper itself

Abstract

Diffuse gliomas are the most common malignant primary brain tumors and remain incurable. A better knowledge of the tumor etiology is required. Specific single nucleotides polymorphisms (SNPs) rs4977756 (CDKN2A/B), rs6010620 (RTEL1), rs498872 (PHLDB1), rs2736100 (TERT), and rs4295627 (CCDC26) have been associated with glioma susceptibility and are potential risk biomarkers. This study aimed to analyze five SNPs associated with glioma susceptibility, in the Portuguese population. SNPs were genotyped using the Sequenom MassARRAY platform in 127 gliomas and 180 controls. Unconditional logistic regression models were used to calculate odds ratio (OR) and 95% confidence intervals. The false-positive report probability was also assessed. The associations between polymorphisms and survival were evaluated using the log-rank test. It was found that the AG and GG genotypes of the rs4977756 (CDKN2A/B) were associated with an increased risk of gliomas (OR 1.85 and OR 2.38) and glioblastomas (OR 2.77 and OR 3.94). The GA genotype of the rs6010620 (RTEL1) was associated with a decreased risk of glioblastomas (OR 0.45). We also observed that the GA genotype of the rs498872 (PHLDB1) was associated with an increased risk of gliomas (OR 2.92) and glioblastomas (OR 2.39). No significant risk associations were found for the rs2736100 (TERT) and rs4295627 (CCDC26). In addition, the genotype AA of the rs498872 (PHLDB1) was associated with poor overall survival of gliomas patients (AA vs. GA, p = 0.037). The rs6010620 (RTEL1), rs4977756 (CDKN2A/B), and rs498872 (PHLDB1) are associated with glioma risk in the Portuguese population and these data may contribute to understanding gliomas etiology.

Indexed as

AdultAllelesCyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16DNA HelicasesEthnicityFemaleGene FrequencyGenetic Predisposition to DiseaseGenome-Wide Association StudyGenotypeGlioblastomaGliomaHumansIntracellular Signaling Peptides and ProteinsMaleCDKN2A protein, humanCDKN2B protein, humanCyclin-Dependent Kinase Inhibitor p15Cyclin-Dependent Kinase Inhibitor p16DNA HelicasesIntracellular Signaling Peptides and ProteinsNerve Tissue ProteinsPHLDB1 protein, humanRTEL1 protein, humanCDKN2A/BGlioma riskGWASPHLDB1RTEL1SNPs

Identifiers

PMID31721021
OpenAlexW2986837026

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.