ArticlePeerJ2019
Genome-wide identification and characterization of the MADS-box gene family in
Article in PeerJ, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.
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Who cites it
15 citing papers in PubMed, 25 citations in OpenAlex.
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- Genome-Wide Identification, Characterization, and Expression Analysis ofPlants (Basel, Switzerland) · 2025Article
- Evolution, Structural and Functional Characteristics of thePlants (Basel, Switzerland) · 2024Article
- Comparative Genomics Analysis of the Populus Epidermal Pattern Factor (EPF) Family Revealed Their Regulatory Effects inInternational journal of molecular sciences · 2024Article
- Comprehensive bioinformation analysis of homeodomain-leucine zipper gene family and expression pattern of HD-Zip I under abiotic stress in Salix suchowensis.BMC genomics · 2024Article
- Identification and Expression of thePlants (Basel, Switzerland) · 2023Article
- Genome-Wide Identification and Analysis of the MADS-Box Transcription Factor Genes in Blueberry (Plants (Basel, Switzerland) · 2023Article
- Gene Structural Specificity and Expression ofInternational journal of molecular sciences · 2023Article
- Identification of MADS-Box Transcription Factors inInternational journal of molecular sciences · 2022Article
- Identification and expression analysis of the MADS-box genes of Kentucky bluegrass during inflorescence development.Physiology and molecular biology of plants : an international journal of functional plant biology · 2022Article
- Genome-Wide Identification of the Ginkgo (International journal of molecular sciences · 2022Article
- Identification and Expression Analysis of theInternational journal of molecular sciences · 2022Article
- Genome-Wide Identification of PLATZ Transcription Factors inFrontiers in plant science · 2022Article
- Article
- Genome-wide study of flowering-related MADS-box genes family in3 Biotech · 2020Article
Corrections and comments
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Authors and funding
6 authors at 2 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
MADS-box genes encode transcription factors that participate in various plant growth and development processes, particularly floral organogenesis. To date, MADS-box genes have been reported in many species, the completion of the sequence of the willow genome provides us with the opportunity to conduct a comprehensive analysis of the willow MADS-box gene family. Here, we identified 60 willow MADS-box genes using bioinformatics-based methods and classified them into 22 M-type (11 Mα, seven Mβ and four Mγ) and 38 MIKC-type (32 MIKCc and six MIKC*) genes based on a phylogenetic analysis. Fifty-six of the 60 SsMADS genes were randomly distributed on 19 putative willow chromosomes. By combining gene structure analysis with evolutionary analysis, we found that the MIKC-type genes were more conserved and played a more important role in willow growth. Further study showed that the MIKC* type was a transition between the M-type and MIKC-type. Additionally, the number of MADS-box genes in gymnosperms was notably lower than that in angiosperms. Finally, the expression profiles of these willow MADS-box genes were analysed in five different tissues (root, stem, leave, bud and bark) and validated by RT-qPCR experiments. This study is the first genome-wide analysis of the willow MADS-box gene family, and the results establish a basis for further functional studies of willow MADS-box genes and serve as a reference for related studies of other woody plants.
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