Evidence map›Paper›PMID 31719609›Full record

ArticleScientific reports2019

Characterization of the dynamics and the conformational entropy in the binding between TAZ1 and CTAD-HIF-1α.

Ida Nyqvist, Jakob Dogan

Abstract read
In one paragraph

Article in Scientific reports, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Article
  5. NMR illuminates intrinsic disorder.Current opinion in structural biology · 2021
    Review
  6. Templated folding of intrinsically disordered proteins.The Journal of biological chemistry · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Ida NyqvistDepartment of Biochemistry and Biophysics, Stockholm University, SE-10691, Stockholm, Sweden.
Jakob DoganDepartment of Biochemistry and Biophysics, Stockholm University, SE-10691, Stockholm, Sweden. jakob.dogan@dbb.su.se.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The interaction between the C-terminal transactivation domain of HIF-1α (CTAD-HIF-1α) and the transcriptional adapter zinc binding 1 (TAZ1) domain of CREB binding protein participate in the initiation of gene transcription during hypoxia. Unbound CTAD-HIF-1α is disordered but undergoes a disorder-to-order transition upon binding to TAZ1. We have here performed NMR side chain and backbone relaxation studies on TAZ1 and side chain relaxation measurements on CTAD-HIF-1α in order to investigate the role of picosecond to nanosecond dynamics. We find that the internal motions are significantly affected upon binding, both on the side chain and the backbone level. The dynamic response corresponds to a conformational entropy change that contributes substantially to the binding thermodynamics for both binding partners. Furthermore, the conformational entropy change for the well-folded TAZ1 varies upon binding to different IDP targets. We further identify a cluster consisting of side chains in bound TAZ1 and CTAD-HIF-1α that experience extensive dynamics and are part of the binding region that involves the N-terminal end of the LPQL motif in CTAD-HIF-1α; a feature that might have an important role in the termination of the hypoxic response.

Indexed as

EntropyAnimalsCREB-Binding ProteinHumansHypoxia-Inducible Factor 1, alpha SubunitMagnetic Resonance SpectroscopyMiceModels, MolecularMotionProtein BindingProtein DomainsCREB-Binding ProteinHypoxia-Inducible Factor 1, alpha Subunit

Identifiers

PMID31719609
PMCPMC6851107

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.