Evidence map›Paper›PMID 31719185›Full record

ArticlemBio2019

NusG-Dependent RNA Polymerase Pausing and Tylosin-Dependent Ribosome Stalling Are Required for Tylosin Resistance by Inducing 23S rRNA Methylation in Bacillus subtilis.

Helen Yakhnin, Alexander V Yakhnin, Brandon L Mouery, Zachary F Mandell, Catherine Karbasiafshar, Mikhail Kashlev, Paul Babitzke

Open access · goldAbstract read
In one paragraph

Article in mBio, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.5field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 31 citations in OpenAlex.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Robust regulation of transcription pausing inProceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  6. Article
  7. Allosteric mechanism of transcription inhibition by NusG-dependent pausing of RNA polymerase.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Article
  8. Article
  9. Article
  10. Article
  11. Toeprint Assays for Detecting RNA Structure and Protein-RNA Interactions.Methods in molecular biology (Clifton, N.J.) · 2022
    Article
  12. Article
  13. NusG controls transcription pausing and RNA polymerase translocation throughout theProceedings of the National Academy of Sciences of the United States of America · 2020
    Article
  14. Article
  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Helen Yakhnin *Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA.
Alexander V Yakhnin *Department of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA.
Brandon L MoueryDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA.
Zachary F MandellDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA.
Catherine KarbasiafsharDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA.
Mikhail KashlevRNA Biology Laboratory, Center for Cancer Research, National Cancer Institute, Frederick, Maryland, USA.
Paul BabitzkeDepartment of Biochemistry and Molecular Biology, Pennsylvania State University, University Park, Pennsylvania, USA pxb28@psu.edu.ORCID 0000-0003-2481-1062
Pennsylvania State University · USNational Cancer Institute · US

Funding

Regulation of transcription elongationR01GM098399 · NIGMS · PENNSYLVANIA STATE UNIVERSITY, THE · PI BABITZKE, PAUL L · 2012 to 2024
$3.6M
NIGMS NIH HHS R01 GM098399
6 · The paper itself

Abstract

Macrolide antibiotics bind to 23S rRNA within the peptide exit tunnel of the ribosome, causing the translating ribosome to stall when an appropriately positioned macrolide arrest motif is encountered in the nascent polypeptide. Tylosin is a macrolide antibiotic produced by

Indexed as

Anti-Bacterial AgentsBacillus subtilisBacterial ProteinsBase SequenceBinding SitesDNA-Directed RNA PolymerasesGene Expression Regulation, BacterialGram-Positive Bacterial InfectionsMethylationPeptide Elongation FactorsPromoter Regions, GeneticProtein BindingRibosomesRNA, Ribosomal, 23STranscription, GeneticTylosinAnti-Bacterial AgentsBacterial ProteinsDNA-Directed RNA PolymerasesPeptide Elongation FactorsRNA, Ribosomal, 23STylosinantibiotic resistanceNusG-dependent RNA polymerase pausingrRNA methylationtranscription attenuation

Identifiers

PMID31719185
PMCPMC6851288
OpenAlexW2985848917

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.