Evidence map›Paper›PMID 31719182›Full record

ArticlemBio2019

Transcriptomic Signatures Predict Regulators of Drug Synergy and Clinical Regimen Efficacy against Tuberculosis.

Shuyi Ma, Suraj Jaipalli, Jonah Larkins-Ford, Jenny Lohmiller, Bree B Aldridge, David R Sherman, Sriram Chandrasekaran

Open access · goldAbstract read
In one paragraph

Article in mBio, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 44 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
44citing papers in PubMed, 1 pooled it
4.5field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

44 citing papers in PubMed, 1 synthesis or guideline pooled it, 66 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Review
  5. Article
  6. Deconvoluting drug interactions usingAntimicrobial agents and chemotherapy · 2025
    Article
  7. Article
  8. Article
  9. Article
  10. Netupitant Exhibits Potent Activity onACS infectious diseases · 2025
    Article
  11. Chemical genetic interactions elucidate pathways controlling tuberculosis antibiotic efficacy during infection.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  12. Article
  13. Predicting fitness inFrontiers in tuberculosis · 2025
    Article
  14. Article
  15. GEODE: anFrontiers in pharmacology · 2025
    Article
  16. Article
  17. Article
  18. Transcriptomic responses to antibiotic exposure inAntimicrobial agents and chemotherapy · 2024
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Shuyi MaCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, Washington, USA.ORCID 0000-0003-0783-1328
Suraj JaipalliDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan, USA.
Jonah Larkins-FordDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, USA.
Jenny LohmillerCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, Washington, USA.
Bree B AldridgeDepartment of Molecular Biology and Microbiology, Tufts University School of Medicine, Boston, Massachusetts, USA.ORCID 0000-0003-2236-1424
David R ShermanCenter for Global Infectious Disease Research, Seattle Children's Research Institute, Seattle, Washington, USA dsherman@uw.edu csriram@umich.edu.
Sriram ChandrasekaranDepartment of Biomedical Engineering, University of Michigan, Ann Arbor, Michigan, USA dsherman@uw.edu csriram@umich.edu.ORCID 0000-0002-8405-5708
Infectious Disease Research Institute · USTufts University · USUniversity of Michigan · US

Funding

Michigan Institute for Clinical and Health Research (MICHR)UL1TR002240 · NCATS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI LUMENG, JULIE C, MASHOUR, GEORGE ALEXANDER · 2017 to 2022
$54.9M
Validation and Application of a Model for Human-like TB Latency in RabbitsU19AI111276 · NIAID · RBHS-NEW JERSEY MEDICAL SCHOOL · PI ALLAND, DAVID, HORN, DAVID LOUIS · 2014 to 2020
$23.3M
Technology CoreU19AI106761 · NIAID · SEATTLE BIOMEDICAL RESEARCH INSTITUTE · PI SHERMAN, DAVID R, ZAK, DANIEL E · 2013 to 2017
$18.9M
Technology CoreU19AI135976 · NIAID · SEATTLE CHILDREN'S HOSPITAL · PI ADEREM, ALAN A · 2018 to 2022
$17.0M
Systems Biology CoreU19AI162598 · NIAID · RUTGERS BIOMEDICAL AND HEALTH SCIENCES · PI SHERMAN, DAVID R · 2021 to 2025
$13.9M
TRANSLATIONAL PHARMACOLOGY COREP50GM107618 · NIGMS · HARVARD MEDICAL SCHOOL · PI JURIC, DEJAN · 2014 to 2018
$10.8M
Diseases of Public Health Importance Training GrantT32AI007509 · NIAID · UNIVERSITY OF WASHINGTON · PI LUND, JENNIFER M · 1997 to 2024
$6.3M
Quantitative Design of Multi-drug Regiments for TuberculosisDP2LM011952 · NLM · TUFTS UNIVERSITY BOSTON · PI ALDRIDGE, BREE BEARDSLEY · 2013 to 2018
$2.9M
NCATS NIH HHS UL1 TR002240NIAID NIH HHS T32 AI007509NIAID NIH HHS U19 AI106761NIAID NIH HHS U19 AI111276NIAID NIH HHS U19 AI135976NIAID NIH HHS U19 AI162598NIGMS NIH HHS P50 GM107618NLM NIH HHS DP2 LM011952
6 · The paper itself

Abstract

The rapid spread of multidrug-resistant strains has created a pressing need for new drug regimens to treat tuberculosis (TB), which kills 1.8 million people each year. Identifying new regimens has been challenging due to the slow growth of the pathogen

Indexed as

TranscriptomeAntitubercular AgentsBiomarkersDrug Resistance, BacterialDrug SynergismDrug Therapy, CombinationGene Expression ProfilingGene Expression Regulation, BacterialHumansMycobacterium tuberculosisTreatment OutcomeTuberculosisAntitubercular AgentsBiomarkerscomputer modelingdrug combinationsdrug interactionsdrug synergygene expressionMycobacterium tuberculosistranscription factorstranscriptomicstuberculosis

Identifiers

PMID31719182
PMCPMC6851285
OpenAlexW2987076930

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.