Evidence map›Paper›PMID 31719178›Full record

ArticlemBio2019

A New Lineage of Cryptococcus gattii (VGV) Discovered in the Central Zambezian Miombo Woodlands.

Rhys A Farrer, Miwha Chang, Michael J Davis, Lucy van Dorp, Dong-Hoon Yang, Terrance Shea, Thomas R Sewell, Wieland Meyer, Francois Balloux, Hannah M Edwards and 7 more

Open access · goldAbstract read
In one paragraph

Article in mBio, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 64 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
64citing papers in PubMed, 1 pooled it
9.4field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

64 citing papers in PubMed, 1 synthesis or guideline pooled it, 90 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. An Emerging Infectious Yeast to Watch:Journal of fungi (Basel, Switzerland) · 2025
    Review
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  7. Tracing the evolution and genomic dynamics of mating-type loci inbioRxiv : the preprint server for biology · 2025
    Article
  8. The Role of Nutritional Environment inInfectious disease reports · 2025
    Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Comparative genomics ofbioRxiv : the preprint server for biology · 2024
    Article
  17. Divergent paths:Current medical mycology · 2024
    Article
  18. Genotyping Analysis ofJournal of fungi (Basel, Switzerland) · 2023
    Article
  19. Article
  20. Article

4 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 7 institutions in 4 countries.

Rhys A FarrerMedical Research Council Centre for Medical Mycology, University of Exeter, Exeter, United Kingdom.ORCID 0000-0001-8456-7458
Miwha ChangMolecular Microbiology Section, Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Michael J DavisMolecular Microbiology Section, Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Lucy van DorpUCL Genetics Institute, University College London, London, United Kingdom.
Dong-Hoon YangMolecular Microbiology Section, Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Terrance SheaBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.
Thomas R SewellMRC Centre for Global Infectious Disease Analysis, Imperial College London, London, United Kingdom.ORCID 0000-0002-7239-4817
Wieland MeyerMolecular Mycology Research Laboratory, Centre for Infectious Diseases and Microbiology, Faculty of Medicine and Health, Sydney Medical School, Westmead Clinical School, Marie Bashir Institute for Infectious Diseases and Biosecurity, The University of Sydney, Sydney, NSW, Australia.ORCID 0000-0001-9933-8340
Francois BallouxUCL Genetics Institute, University College London, London, United Kingdom.
Hannah M EdwardsMRC Centre for Global Infectious Disease Analysis, Imperial College London, London, United Kingdom.
Duncan ChandaAdult Centre of Excellence, University Teaching Hospital, Lusaka, Zambia.
Geoffrey KwendaDepartment of Biomedical Sciences, School of Health Sciences, University of Zambia, Lusaka, Zambia.
Mathieu VanhoveMRC Centre for Global Infectious Disease Analysis, Imperial College London, London, United Kingdom.
Yun C ChangMolecular Microbiology Section, Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA.
Christina A CuomoBroad Institute of MIT and Harvard, Cambridge, Massachusetts, USA.ORCID 0000-0002-5778-960X
Matthew C FisherMRC Centre for Global Infectious Disease Analysis, Imperial College London, London, United Kingdom.ORCID 0000-0002-1862-6402
Kyung J Kwon-ChungMolecular Microbiology Section, Laboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases, National Institutes of Health, Bethesda, Maryland, USA jkchung@niaid.nih.gov.
National Institutes of Health · USImperial College London · GBBroad Institute · USUniversity College London · GBThe University of Sydney · AUUniversity of Zambia · ZMUniversity Teaching Hospital · ZM

Funding

Viral Genomics: evolution, spread, and host interactionsU19AI110818 · NIAID · BROAD INSTITUTE, INC. · PI SABETI, PARDIS CHRISTINE · 2014 to 2024
$66.5M
Pathogenic differences between Cryptococcus neoformans and C. gattiiZIAAI000744 · NIAID · NATIONAL INSTITUTE OF ALLERGY AND INFECTIOUS DISEASES · PI KWON-CHUNG, KYUNG · 2010 to 2025
$10.9M
Medical Research Council MR/N006364/1Medical Research Council MR/R015600/1NIAID NIH HHS U19 AI110818
6 · The paper itself

Abstract

We discovered a new lineage of the globally important fungal pathogen

Indexed as

Environmental MicrobiologyForestsAnimal DiseasesAnimalsCryptococcus gattiiGenome, FungalGenomicsPhenotypePhylogenyPlant DiseasesSoil MicrobiologyZambiaCryptococcusdrug resistance evolutiongenome analysismolecular epidemiologymycologypopulation genetics

Identifiers

PMID31719178
PMCPMC6851281
OpenAlexW2989244762

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.