ArticleBMC plant biology2019
Mining candidate gene for rice aluminum tolerance through genome wide association study and transcriptomic analysis.
Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.
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Who cites it
8 citing papers in PubMed.
- From QTL mapping to genome editing: advances and integrated strategies for improving aluminum tolerance in crops.Frontiers in plant science · 2026Review
- Genetic dissection of seedling root architecture under aluminium toxicity in tropical maize (Frontiers in plant science · 2025Article
- Combined BSA-Seq and RNA-Seq Analysis to Identify Candidate Genes Associated with Aluminum Toxicity in Rapeseed (International journal of molecular sciences · 2024Article
- Genomic selection for tolerance to aluminum toxicity in a synthetic population of upland rice.PloS one · 2024Article
- Genome-Wide Association Study of Zinc Toxicity Tolerance within a Rice Core Collection (Plants (Basel, Switzerland) · 2022Article
- Integration of GWAS and transcriptome analyses to identify SNPs and candidate genes for aluminum tolerance in rapeseed (Brassica napus L.).BMC plant biology · 2022Article
- Advances in "Omics" Approaches for Improving Toxic Metals/Metalloids Tolerance in Plants.Frontiers in plant science · 2021Review
- Epigenetic Control of Plant Response to Heavy Metal Stress: A New View on Aluminum Tolerance.Frontiers in plant science · 2020Review
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Authors and funding
4 authors.
Funding
Abstract
backgroundThe genetic mechanism of aluminum (Al) tolerance in rice is great complicated. Uncovering genetic mechanism of Al tolerance in rice is the premise for Al tolerance improvement. Mining elite genes within rice landrace is of importance for improvement of Al tolerance in rice.
resultsGenome-wide association study (GWAS) performed in EMMAX for rice Al tolerance was carried out using 150 varieties of Ting's core collection constructed from 2262 Ting's collections with more than 3.8 million SNPs. Within Ting's core collection of clear population structure and kinship relatedness as well as high rate of linkage disequilibrium (LD) decay, 17 genes relating to rice Al tolerance including cloned genes like NRAT1, ART1 and STAR1 were identified in this study. Moreover, 13 new candidate regions with high LD and 69 new candidate genes were detected. Furthermore, 20 of 69 new candidate genes were detected with significant difference between Al treatment and without Al toxicity by transcriptome sequencing. Interestingly, both qRT-PCR and sequence analysis in CDS region demonstrated that the candidate genes in present study might play important roles in rice Al tolerance.
conclusionsThe present study provided important information for further using these elite genes existing in Ting's core collection for improvement of rice Al tolerance.
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