Evidence map›Paper›PMID 31717338›Full record

ArticleViruses2019

Visualization of Positive and Negative Sense Viral RNA for Probing the Mechanism of Direct-Acting Antivirals against Hepatitis C Virus.

Dandan Liu, Philip R Tedbury, Shuiyun Lan, Andrew D Huber, Maritza N Puray-Chavez, Juan Ji, Eleftherios Michailidis, Mohsan Saeed, Tanyaradzwa P Ndongwe, Leda C Bassit and 4 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 17 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Detection methods targeting the positive- and negative-sense RNA transcripts from plus-stranded RNA viruses.APMIS : acta pathologica, microbiologica, et immunologica Scandinavica · 2022
    Article
  8. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 3 institutions in 1 country.

Dandan LiuCS Bond Life Sciences Center, University of Missouri, Columbia, MO 65201, USA.
Philip R TedburyCS Bond Life Sciences Center, University of Missouri, Columbia, MO 65201, USA.ORCID 0000-0001-8151-4967
Shuiyun LanCenter for AIDS Research, Laboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Andrew D HuberCS Bond Life Sciences Center, University of Missouri, Columbia, MO 65201, USA.ORCID 0000-0002-3790-8368
Maritza N Puray-ChavezCS Bond Life Sciences Center, University of Missouri, Columbia, MO 65201, USA.
Juan JiCS Bond Life Sciences Center, University of Missouri, Columbia, MO 65201, USA.
Eleftherios MichailidisLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.ORCID 0000-0002-9907-4346
Mohsan SaeedLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.
Tanyaradzwa P NdongweCS Bond Life Sciences Center, University of Missouri, Columbia, MO 65201, USA.
Leda C BassitCenter for AIDS Research, Laboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Raymond F SchinaziCenter for AIDS Research, Laboratory of Biochemical Pharmacology, Department of Pediatrics, Emory University School of Medicine, Atlanta, GA 30322, USA.
Robert RalstonCS Bond Life Sciences Center, University of Missouri, Columbia, MO 65201, USA.
Charles M RiceLaboratory of Virology and Infectious Disease, The Rockefeller University, New York, NY 10065, USA.
Stefan G SarafianosCS Bond Life Sciences Center, University of Missouri, Columbia, MO 65201, USA.
University of Missouri · USEmory University · USRockefeller University · US

Funding

Virology and Molecular Biomarkers CoreP30AI050409 · NIAID · EMORY UNIVERSITY · PI Carlos del Rio · 2002 to 2026
$74.0M
Project 9P50GM103368 · NIGMS · SCRIPPS RESEARCH INSTITUTE, THE · PI ARNOLD, EDWARD · 2012 to 2016
$20.0M
Structural studies of HIV Capsid with host factors and Capsid-targeting antiviralsR01AI120860 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI Stefan G Sarafianos, Zhengqiang Wang · 2015 to 2026
$6.0M
Hepatitis C antivirals: Mechanism of action, combination efficacy and resistanceR01AI099284 · NIAID · ROCKEFELLER UNIVERSITY · PI RICE, CHARLES M · 2012 to 2016
$3.6M
Taking aim at HBV eradication using novel NRTIs and Capsid effectorsR01AI121315 · NIAID · UNIVERSITY OF MISSOURI-COLUMBIA · PI SARAFIANOS, STEFAN G, WANG, ZHENGQIANG · 2016 to 2020
$3.0M
NIAID NIH HHS 2P30-AI-050409NIAID NIH HHS AI099284NIAID NIH HHS AI120860NIAID NIH HHS AI121315NIAID NIH HHS P30 AI050409NIAID NIH HHS R01 AI099284NIAID NIH HHS R01 AI120860NIAID NIH HHS R01 AI121315NIGMS NIH HHS GM103368NIGMS NIH HHS P50 GM103368
6 · The paper itself

Abstract

RNA viruses are highly successful pathogens and are the causative agents for many important diseases. To fully understand the replication of these viruses it is necessary to address the roles of both positive-strand RNA ((+)RNA) and negative-strand RNA ((-)RNA), and their interplay with viral and host proteins. Here we used branched DNA (bDNA) fluorescence in situ hybridization (FISH) to stain both the abundant (+)RNA and the far less abundant (-)RNA in both hepatitis C virus (HCV)- and Zika virus-infected cells, and combined these analyses with visualization of viral proteins through confocal imaging. We were able to phenotypically examine HCV-infected cells in the presence of uninfected cells and revealed the effect of direct-acting antivirals on HCV (+)RNA, (-)RNA, and protein, within hours of commencing treatment. Herein, we demonstrate that bDNA FISH is a powerful tool for the study of RNA viruses that can provide insights into drug efficacy and mechanism of action.

Indexed as

HepacivirusRNA, ViralAntiviral AgentsCell LineHepatitis CHumansIn Situ Hybridization, FluorescenceVirus ReplicationZika VirusZika Virus InfectionAntiviral AgentsRNA, Viraldirect acting antiviralshepatitis C virusnegative-sensepositive-senseRNA FISHZika virus

Identifiers

PMID31717338
PMCPMC6893808
OpenAlexW2986964235

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.