Evidence map›Paper›PMID 31715076›Full record

ArticleJournal of applied microbiology2020

Detection and identification of a protein biomarker in antibiotic-resistant Escherichia coli using intact protein LC offline MALDI-MS and MS/MS.

A Maus, B Bisha, C Fagerquist, F Basile

Open access · greenAbstract read
In one paragraph

Article in Journal of applied microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 10 papers.

0numbers the graph read from it
0cells of the map it votes in
10citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

10 citing papers in PubMed, 27 citations in OpenAlex.

  1. Review
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  4. Mechanism-guided strategies for combating antibiotic resistance.World journal of microbiology & biotechnology · 2024
    Review
  5. Article
  6. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

A MausDepartment of Chemistry, University of Wyoming, Laramie, WY, USA.
B BishaDepartment of Animal Science, University of Wyoming, Laramie, WY, USA.
C FagerquistU.S. Department of Agriculture, Western Regional Research Center, Agricultural Research Service, Albany, CA, USA.
F BasileDepartment of Chemistry, University of Wyoming, Laramie, WY, USA.ORCID https://orcid.org/0000-0002-0000-4269
University of Wyoming · USWestern Regional Research Center · US

Funding

Wyoming INBRE Phase 4- Equipment Supplement for x-ray diffractometer for Center for Advanced Scientific InstrumentationP20GM103432 · NIGMS · UNIVERSITY OF WYOMING · PI Robert Scott Seville · 2012 to 2026
$56.8M
Directorate for Mathematical and Physical Sciences NSF-MRI 1429615National Institute of Food and Agriculture WYO-511-14NIGMS NIH HHS P20 GM103432NIGMS NIH HHS P20GM103432
6 · The paper itself

Abstract

aimsThe identification and differentiation of antibiotic-resistant bacteria by matrix-assisted laser desorption/ionization-time of flight-mass spectrometry (MALDI-TOF-MS) profiling remains a challenge due to the difficulty in detecting unique protein biomarkers associated with this trait. To expand the detectable proteome in antibiotic-resistant bacteria, we describe a method implementing offline LC protein separation/fractionation prior to MALDI-ToF-MS and top-down MALDI-ToF/ToF-MS (tandem MS or MS/MS) for the analysis of several antibiotic-resistant Escherichia coli isolates. METHODS AND

resultsCoupling offline LC with MALDI-ToF-MS increased the number of detected protein signals in the typically analyzed mass regions (m/z 3000-20 000) by a factor of 13. Using the developed LC-MALDI-ToF-MS protocol in conjunction with supervised principal components analysis, we detected a protein biomarker at m/z 9355 which correlated to β-lactam resistance among the E. coli bacteria tested. Implementing a top-down MALDI-ToF/ToF-MS approach, the prefractionated protein biomarker was inferred as a DNA-binding HU protein, likely translated from the bla

conclusionsOur results demonstrate the utility of LC-MALDI-MS and MS/MS to extend the number of proteins detected and perform MALDI-accessible protein biomarker discovery in microorganisms. SIGNIFICANCE AND IMPACT OF THE STUDY: This outcome is significant since it expands the detectable bacterial proteome via MALDI-ToF-MS.

Indexed as

Drug Resistance, BacterialBacterial Proteinsbeta-LactamasesBiomarkersChromatography, LiquidDNA-Binding ProteinsEscherichia coliEscherichia coli ProteinsHumansProteomeProteomicsSpectrometry, Mass, Matrix-Assisted Laser Desorption-IonizationTandem Mass SpectrometryAmpC beta-lactamasesBacterial Proteinsbeta-LactamasesBiomarkersDNA-Binding ProteinsEscherichia coli ProteinsProteomeagriculturedetectionE. coli (all potentially pathogenic types)proteomicsresistance

Identifiers

PMID31715076
PMCPMC7444928
OpenAlexW2989074879

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.