Evidence map›Paper›PMID 31714936›Full record

ArticlePLoS biology2019

Building de novo cryo-electron microscopy structures collaboratively with citizen scientists.

Firas Khatib, Ambroise Desfosses, Foldit Players, Brian Koepnick, Jeff Flatten, Zoran Popović, David Baker, Seth Cooper, Irina Gutsche, Scott Horowitz

Abstract read
In one paragraph

Article in PLoS biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Reconstructing biological molecules with help from video gamers.Acta crystallographica. Section D, Structural biology · 2025
    Article
  2. Article
  3. In-cell Structure and Variability of Pyrenoid Rubisco.bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
  5. Article
  6. Review
  7. Structural Biology in the Multi-Omics Era.Journal of chemical information and modeling · 2020
    Article
  8. Homology modeling in the time of collective and artificial intelligence.Computational and structural biotechnology journal · 2020
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Firas KhatibDepartment of Computer and Information Science, University of Massachusetts Dartmouth, Dartmouth, Massachusetts, United States of America.ORCID 0000-0002-6817-7297
Ambroise DesfossesInstitut de Biologie Structurale, University Grenoble Alpes, CEA, CNRS, Grenoble, France.ORCID 0000-0002-6525-5042
Foldit Players
Brian KoepnickDepartment of Biochemistry, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0002-5792-8112
Jeff FlattenCenter for Game Science, Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0003-2339-2935
Zoran PopovićCenter for Game Science, Paul G. Allen School of Computer Science and Engineering, University of Washington, Seattle, Washington, United States of America.
David BakerDepartment of Biochemistry, University of Washington, Seattle, Washington, United States of America.
Seth CooperKhoury College of Computer Sciences, Northeastern University, Boston, Massachusetts, United States of America.
Irina GutscheInstitut de Biologie Structurale, University Grenoble Alpes, CEA, CNRS, Grenoble, France.
Scott HorowitzDepartment of Chemistry and Biochemistry and the Knoebel Institute for Healthy Aging, University of Denver, Denver, Colorado, United States of America.ORCID 0000-0002-1148-0105

Funding

INVESTIGATING THE CHAPERONE ACTIVITY OF NUCLEIC ACIDSR00GM120388 · NIGMS · UNIVERSITY OF DENVER (COLORADO SEMINARY) · PI HOROWITZ, SCOTT ANDREW · 2018 to 2020
$745k
Applying Protein Databases to Crowdsourcing Structural Protein DesignUH2CA203780 · NCI · NORTHEASTERN UNIVERSITY · PI COOPER, SETH EVERETT, KHATIB, FIRAS · 2016 to 2017
$620k
NCI NIH HHS UH2 CA203780NIGMS NIH HHS R00 GM120388
6 · The paper itself

Abstract

With the rapid improvement of cryo-electron microscopy (cryo-EM) resolution, new computational tools are needed to assist and improve upon atomic model building and refinement options. This communication demonstrates that microscopists can now collaborate with the players of the computer game Foldit to generate high-quality de novo structural models. This development could greatly speed the generation of excellent cryo-EM structures when used in addition to current methods.

Indexed as

Citizen ScienceVideo GamesAlgorithmsBiochemistryCryoelectron MicroscopyModels, Molecular

Identifiers

PMID31714936
PMCPMC6850521

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.