Evidence map›Paper›PMID 31714899›Full record

ArticleThe Journal of clinical investigation2020

Methylation of immune synapse genes modulates tumor immunogenicity.

Anders Berglund, Matthew Mills, Ryan M Putney, Imène Hamaidi, James Mulé, Sungjune Kim

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of clinical investigation, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 35 papers.

0numbers the graph read from it
0cells of the map it votes in
35citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

35 citing papers in PubMed, 54 citations in OpenAlex.

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  9. Cold and hot tumors: from molecular mechanisms to targeted therapy.Signal transduction and targeted therapy · 2024
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Anders BerglundDepartment of Bioinformatics and Biostatistics.
Matthew MillsDepartment of Radiation Oncology.
Ryan M PutneyDepartment of Bioinformatics and Biostatistics.
Imène HamaidiDepartment of Immunology, and.
James MuléDepartment of Radiation Oncology.
Sungjune KimDepartment of Radiation Oncology.
Moffitt Cancer Center · US

Funding

TRANSLATIONAL RESEARCHP30CA076292 · NCI · UNIVERSITY OF SOUTH FLORIDA · PI KENNETH Lynn WRIGHT · 1998 to 2026
$93.5M
Epigenetic Modulation of Immune Tolerance by Ionizing Radiation and ChemotherapyK08CA194273 · NCI · H. LEE MOFFITT CANCER CTR & RES INST · PI KIM, SUNGJUNE · 2016 to 2020
$821k
NCI NIH HHS K08 CA194273NCI NIH HHS P30 CA076292
6 · The paper itself

Abstract

Cancer immune evasion is achieved through multiple layers of immune tolerance mechanisms including immune editing, recruitment of tolerogenic immune cells, and secretion of immunosuppressive cytokines. Recent success with immune checkpoint inhibitors in cancer immunotherapy suggests a dysfunctional immune synapse as a pivotal tolerogenic mechanism. Tumor cells express immune synapse proteins to suppress the immune system, which is often modulated by epigenetic mechanisms. When the methylation status of key immune synapse genes was interrogated, we observed disproportionately hypermethylated costimulatory genes and hypomethylation of immune checkpoint genes, which were negatively associated with functional T cell recruitment to the tumor microenvironment. Therefore, the methylation status of immune synapse genes reflects tumor immunogenicity and correlates with survival.

Indexed as

DNA MethylationGenes, NeoplasmCell Line, TumorDNA, NeoplasmEpigenesis, GeneticGene Expression Regulation, NeoplasticHumansImmunological SynapsesNeoplasmsT-LymphocytesTumor MicroenvironmentDNA, NeoplasmCancer immunotherapyEpigeneticsImmunology

Identifiers

PMID31714899
PMCPMC6994116
OpenAlexW2982749965

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.