Evidence map›Paper›PMID 31712914›Full record

ArticleJournal, genetic engineering & biotechnology2019

Expression of a cucumber alanine aminotransferase2 gene improves nitrogen use efficiency in transgenic rice.

Atmitri Sisharmini, Aniversari Apriana, Nurul Khumaida, Kurniawan Rudi Trijatmiko, Bambang Sapta Purwoko

Open access · diamondAbstract read
In one paragraph

Article in Journal, genetic engineering & biotechnology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
  2. Role of alanine aminotransferase in crop resilience to climate change: a critical review.Physiology and molecular biology of plants : an international journal of functional plant biology · 2024
    Review
  3. New Insight into Aspartate Metabolic Pathways inInternational journal of molecular sciences · 2022
    Article
  4. Review
  5. Review
  6. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Atmitri SisharminiPlant Breeding and Biotechnology Study Program, Departement of Agronomy and Horticulture, IPB University (Bogor Agricultural University), Jl. Meranti, Kampus IPB Darmaga, Bogor, 16680, Indonesia.
Aniversari AprianaIndonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development, Jl. Tentara Pelajar 3A, Bogor, 16111, Indonesia.
Nurul KhumaidaPlant Breeding and Biotechnology Study Program, Departement of Agronomy and Horticulture, IPB University (Bogor Agricultural University), Jl. Meranti, Kampus IPB Darmaga, Bogor, 16680, Indonesia.
Kurniawan Rudi TrijatmikoIndonesian Center for Agricultural Biotechnology and Genetic Resources Research and Development, Jl. Tentara Pelajar 3A, Bogor, 16111, Indonesia.
Bambang Sapta PurwokoPlant Breeding and Biotechnology Study Program, Departement of Agronomy and Horticulture, IPB University (Bogor Agricultural University), Jl. Meranti, Kampus IPB Darmaga, Bogor, 16680, Indonesia. bspurwoko@apps.ipb.ac.id.
Indonesian Agency for Agricultural Research and Development · IDIPB University · ID

Funding

Balai Besar Penelitian dan Pengembangan Bioteknologi dan Sumber Daya Genetik Pertanian 1798.201.052.A
6 · The paper itself

Abstract

backgroundRice can absorb less than 40% of applied nitrogen fertilizer, whereas the unabsorbed nitrogen fertilizer may cause environmental problems, such as algal blooms in freshwater and increased production of nitrous oxide, a greenhouse gas which is 300 times more potent than carbon dioxide. Development of nitrogen use efficient (NUE) rice is essential for more environmentally friendly rice production. Recently, NUE rice has been developed by root-specific expression of alanine aminotransferase (AlaAT) gene from barley, a monocot plant. Therefore, we tested the efficacy of AlaAT gene from cucumber in transgenic rice, aiming to provide evidence for the conservation of AlaAT gene function in monocot and dicot.

resultsAlaAT gene from cucumber (CsAlaAT2) has been successfully cloned and constructed on pCAMBIA1300 plant expression vectors under the control of tissue-specific promoter OsAnt1. Agrobacterium tumefaciens-mediated transformation of Indonesian rice cv. Fatmawati using this construct produced 14 transgenic events. Pre-screening of T1 seedlings grown in the agar medium containing low nitrogen concentration identified selected events that were superior in the root dry weight. Southern hybridization confirmed the integration of T-DNA in the selected event genomes, each of them carried 1, 2, or 3 T-DNA insertions. Efficacy assay of three lead events in the greenhouse showed that in general transgenic events had increased biomass, tiller number, nitrogen content, and grain yield compared to WT. One event, i.e., FAM13, showed an increase in yield as much as 27.9% and higher plant biomass as much as 27.4% compared to WT under the low nitrogen condition. The lead events also showed higher absorption NUE, agronomical NUE, and grain NUE as compared to WT under the low nitrogen condition.

conclusionsThe results of this study showed that root-specific expression of cucumber alanine aminotransferase2 gene improved nitrogen use efficiency in transgenic rice, which indicate the conservation of function of this gene in monocot and dicot.

Indexed as

Alanine aminotransferaseCucumberNitrogen use efficiencyRice

Identifiers

PMID31712914
PMCPMC6848643
OpenAlexW2988580179

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.