Evidence map›Paper›PMID 31712697›Full record

ArticleNature ecology & evolution2019

Environmental boundary conditions for the origin of life converge to an organo-sulfur metabolism.

Joshua E Goldford, Hyman Hartman, Robert Marsland, Daniel Segrè

Abstract read
In one paragraph

Article in Nature ecology & evolution, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 28 papers.

0numbers the graph read from it
0cells of the map it votes in
28citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

28 citing papers in PubMed.

  1. The history of enzyme evolution embedded in metabolism.Proceedings of the National Academy of Sciences of the United States of America · 2026
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  13. Hydrogen Drives Part of the Reverse Krebs Cycle under Metal or Meteorite Catalysis.Angewandte Chemie (International ed. in English) · 2022
    Article
  14. An evolutionary history of the CoA-binding protein Nat/Ivy.Protein science : a publication of the Protein Society · 2022
    Review
  15. Protein cost minimization promotes the emergence of coenzyme redundancy.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  16. Scaling laws in enzyme function reveal a new kind of biochemical universality.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  17. Article
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  20. The Grayness of the Origin of Life.Life (Basel, Switzerland) · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Joshua E GoldfordBioinformatics Program, Boston University, Boston, MA, USA. goldford@bu.edu.ORCID http://orcid.org/0000-0001-7315-8018
Hyman HartmanEarth, Atmosphere and Planetary Science Department, Massachusetts Institute of Technology, Cambridge, MA, USA.
Robert MarslandDepartment of Physics, Boston University, Boston, MA, USA.ORCID http://orcid.org/0000-0002-5007-6877
Daniel SegrèBioinformatics Program, Boston University, Boston, MA, USA. dsegre@bu.edu.ORCID http://orcid.org/0000-0003-4859-1914

Funding

Predoctoral Training in Bioinformatics and Computational BiologyT32GM100842 · NIGMS · BOSTON UNIVERSITY (CHARLES RIVER CAMPUS) · PI TULLIUS, THOMAS D · 2012 to 2022
$2.8M
NIGMS NIH HHS T32 GM100842
6 · The paper itself

Abstract

It has been suggested that a deep memory of early life is hidden in the architecture of metabolic networks, whose reactions could have been catalyzed by small molecules or minerals before genetically encoded enzymes. A major challenge in unravelling these early steps is assessing the plausibility of a connected, thermodynamically consistent proto-metabolism under different geochemical conditions, which are still surrounded by high uncertainty. Here we combine network-based algorithms with physico-chemical constraints on chemical reaction networks to systematically show how different combinations of parameters (temperature, pH, redox potential and availability of molecular precursors) could have affected the evolution of a proto-metabolism. Our analysis of possible trajectories indicates that a subset of boundary conditions converges to an organo-sulfur-based proto-metabolic network fuelled by a thioester- and redox-driven variant of the reductive tricarboxylic acid cycle that is capable of producing lipids and keto acids. Surprisingly, environmental sources of fixed nitrogen and low-potential electron donors are not necessary for the earliest phases of biochemical evolution. We use one of these networks to build a steady-state dynamical metabolic model of a protocell, and find that different combinations of carbon sources and electron donors can support the continuous production of a minimal ancient 'biomass' composed of putative early biopolymers and fatty acids.

Indexed as

Citric Acid CycleMetabolic Networks and PathwaysBiomassCarbonSulfurCarbonSulfur

Identifiers

PMID31712697
PMCPMC6881557

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.