Evidence map›Paper›PMID 31712445›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2019

Colorectal cancer-associated microbiota contributes to oncogenic epigenetic signatures.

Iradj Sobhani, Emma Bergsten, Séverine Couffin, Aurélien Amiot, Biba Nebbad, Caroline Barau, Nicola de'Angelis, Sylvie Rabot, Florence Canoui-Poitrine, Denis Mestivier and 3 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 147 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
147citing papers in PubMed, 1 pooled it
9.6field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

147 citing papers in PubMed, 1 synthesis or guideline pooled it, 216 citations in OpenAlex.

  1. Pooled it
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  13. Characteristics of gut microbiota in high-methylated colorectal cancer.International journal of clinical oncology · 2025
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  17. Intestinal dysbiosis and colorectal cancer.Chinese medical journal · 2025
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87 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 5 institutions in 2 countries.

Iradj SobhaniEA7375 (EC2M3 Research Team), Université Paris Est, Créteil 94000, France; iradj.sobhani@aphp.fr philippe.sansonetti@pasteur.fr.
Emma BergstenEA7375 (EC2M3 Research Team), Université Paris Est, Créteil 94000, France.
Séverine CouffinEA7375 (EC2M3 Research Team), Université Paris Est, Créteil 94000, France.
Aurélien AmiotEA7375 (EC2M3 Research Team), Université Paris Est, Créteil 94000, France.
Biba NebbadService de Microbiologie, Hôpital Henri Mondor, Assistance Publique-Hôpitaux de Paris, Créteil 94000, France.
Caroline BarauPlateforme de Ressources Biologique, Hôpital Henri Mondor, Créteil 94000, France.
Nicola de'AngelisService de Chirurgie Digestive, Hôpital Henri Mondor, Assistance Publique-Hôpitaux de Paris, Créteil 94000, France.
Sylvie RabotMicalis Institute, Institut National de la Recherche Agronomique (INRA), AgroParisTech, Université Paris-Saclay, Jouy-en-Josas 78352, France.
Florence Canoui-PoitrineService de Santé Publique, Hôpital Henri Mondor, Assistance Publique-Hôpitaux de Paris, Créteil 94000, France.
Denis MestivierEA7375 (EC2M3 Research Team), Université Paris Est, Créteil 94000, France.
Thierry PédronUnité de Pathogénie Microbienne Moléculaire, INSERM U1202, Institut Pasteur, Paris 75015, France.
Khashayarsha KhazaieDepartment of Immunology, Mayo Clinic, Rochester, MN 55905.ORCID 0000-0002-7884-1817
Philippe J SansonettiUnité de Pathogénie Microbienne Moléculaire, INSERM U1202, Institut Pasteur, Paris 75015, France; iradj.sobhani@aphp.fr philippe.sansonetti@pasteur.fr.
Inserm · FRAssistance Publique – Hôpitaux de Paris · FRUniversité Paris-Est Créteil · FRAgroParisTech · FRMayo Clinic in Arizona · US

Funding

How beta-catenin expands Foxp3+RORgammat+ Pro-inflammatoryT-regulatory cells - RenewalR01AI108682 · NIAID · UNIVERSITY OF CHICAGO · PI GOUNARI, FOTINI, KHAZAIE, KHASHAYARSHA · 2014 to 2024
$5.1M
Epigenetic mechanisms of carcinogenesis by Parvimonas micra, an oral cavity commensal turned colon cancer pathogenR01CA264048 · NCI · MAYO CLINIC ARIZONA · PI BOARDMAN, LISA ALLYN, GOUNARI, FOTINI · 2021 to 2025
$3.1M
NCI NIH HHS R01 CA264048NIAID NIH HHS R01 AI108682
6 · The paper itself

Abstract

Sporadic colorectal cancer (CRC) is a result of complex interactions between the host and its environment. Environmental stressors act by causing host cell DNA alterations implicated in the onset of cancer. Here we investigate the stressor ability of CRC-associated gut dysbiosis as causal agent of host DNA alterations. The epigenetic nature of these alterations was investigated in humans and in mice. Germ-free mice receiving fecal samples from subjects with normal colonoscopy or from CRC patients were monitored for 7 or 14 wk. Aberrant crypt foci, luminal microbiota, and DNA alterations (colonic exome sequencing and methylation patterns) were monitored following human feces transfer. CRC-associated microbiota induced higher numbers of hypermethylated genes in murine colonic mucosa (vs. healthy controls' microbiota recipients). Several gene promoters including SFRP1,2,3, PENK, NPY, ALX4, SEPT9, and WIF1 promoters were found hypermethylated in CRC but not in normal tissues or effluents from fecal donors. In a pilot study (

Indexed as

Epigenesis, GeneticAnimalsCohort StudiesColorectal NeoplasmsDNA MethylationDysbiosisFecal Microbiota TransplantationFecesFemaleGastrointestinal MicrobiomeGene Expression RegulationGerm-Free LifeHumansIntestinal MucosaMaleMice, Inbred C3HRNA, Ribosomal, 16Sbiomarkercancercolongene methylationmicrobiota

Identifiers

PMID31712445
PMCPMC6883805
OpenAlexW2984618995

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.