Evidence map›Paper›PMID 31712406›Full record

ArticleThe Plant cell2020

Advanced Cataloging of Lysine-63 Polyubiquitin Networks by Genomic, Interactome, and Sensor-Based Proteomic Analyses.

Natali Romero-Barrios, Dario Monachello, Ulla Dolde, Aloysius Wong, Hélène San Clemente, Anne Cayrel, Alexander Johnson, Claire Lurin, Grégory Vert

Open access · bronzeAbstract read
In one paragraph

Article in The Plant cell, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
2.3field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
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  6. Review
  7. Article
  8. Functional Characterization of PotatoInternational journal of molecular sciences · 2023
    Article
  9. Article
  10. Article
  11. Amino acid motifs for the identification of novel protein interactants.Computational and structural biotechnology journal · 2023
    Review
  12. Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Root Membrane Ubiquitinome under Short-Term Osmotic Stress.International journal of molecular sciences · 2022
    Article
  19. Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Natali Romero-BarriosInstitute for Integrative Biology of the Cell (I2BC), CNRS/CEA/Université Paris-Sud, Université Paris-Saclay, 91198 Gif-sur-Yvette, France.ORCID 0000-0003-1375-8569
Dario MonachelloInstitute of Plant Sciences Paris-Saclay (IPS2), CNRS, INRA, Université Paris-Sud, Université d'Evry, Université Paris-Saclay, 91405 Orsay, France.ORCID 0000-0001-7551-0214
Ulla DoldePlant Science Research Laboratory (LRSV), UMR5546 CNRS/Université Toulouse 3, 31320 Castanet-Tolosan, France.ORCID 0000-0002-7007-4027
Aloysius WongInstitute for Integrative Biology of the Cell (I2BC), CNRS/CEA/Université Paris-Sud, Université Paris-Saclay, 91198 Gif-sur-Yvette, France.ORCID 0000-0002-9105-5845
Hélène San ClementePlant Science Research Laboratory (LRSV), UMR5546 CNRS/Université Toulouse 3, 31320 Castanet-Tolosan, France.ORCID 0000-0002-1864-6577
Anne CayrelInstitute for Integrative Biology of the Cell (I2BC), CNRS/CEA/Université Paris-Sud, Université Paris-Saclay, 91198 Gif-sur-Yvette, France.ORCID 0000-0003-2067-3272
Alexander JohnsonInstitute for Integrative Biology of the Cell (I2BC), CNRS/CEA/Université Paris-Sud, Université Paris-Saclay, 91198 Gif-sur-Yvette, France.ORCID 0000-0002-2739-8843
Claire LurinInstitute of Plant Sciences Paris-Saclay (IPS2), CNRS, INRA, Université Paris-Sud, Université d'Evry, Université Paris-Saclay, 91405 Orsay, France.ORCID 0000-0003-3516-4438
Grégory VertInstitute for Integrative Biology of the Cell (I2BC), CNRS/CEA/Université Paris-Sud, Université Paris-Saclay, 91198 Gif-sur-Yvette, France gregory.vert@lrsv.ups-tlse.fr.ORCID 0000-0002-0844-9991
Université Paris-Sud · FRCentre National de la Recherche Scientifique · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The lack of resolution when studying the many different ubiquitin chain types found in eukaryotic cells has been a major hurdle to our understanding of their specific roles. We currently have very little insight into the cellular and physiological functions of Lys-63 (K63)-linked ubiquitin chains, although they are the second most abundant forms of ubiquitin in plant cells. To overcome this problem, we developed several large-scale approaches to characterize (1) the E2-E3 ubiquitination machinery driving K63-linked ubiquitin chain formation and (2) K63 polyubiquitination targets to provide a comprehensive picture of K63 polyubiquitin networks in Arabidopsis (

Indexed as

GenomicsProteomicsArabidopsisArabidopsis ProteinsCatalogingLysinePlant CellsPolyubiquitinUbiquitinUbiquitinationUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesArabidopsis ProteinsLysinePolyubiquitinUBC13A protein, ArabidopsisUBC13B protein, ArabidopsisUbiquitinUbiquitin-Conjugating EnzymesUbiquitin-Protein Ligases

Identifiers

PMID31712406
PMCPMC6961633
OpenAlexW2986153361

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.