Evidence map›Paper›PMID 31712278›Full record

ArticleJournal of bacteriology2020

Genetic Manipulation of Wild Human Gut

Natasha A Bencivenga-Barry, Bentley Lim, Carmen M Herrera, M Stephen Trent, Andrew L Goodman

Open access · greenAbstract read
In one paragraph

Article in Journal of bacteriology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 32 papers.

0numbers the graph read from it
0cells of the map it votes in
32citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

32 citing papers in PubMed, 61 citations in OpenAlex.

  1. Article
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  3. Review
  4. Article
  5. Article
  6. Lessons from the model gut BacteroidalesJournal of bacteriology · 2025
    Review
  7. Niche partitioning by resource size in the gut microbiome.bioRxiv : the preprint server for biology · 2025
    Article
  8. A nonenzymatic effector disruptsProceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  9. Article
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  12. Article
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  14. Article
  15. Article
  16. Article
  17. Dual membrane-spanning anti-sigma factors regulate vesiculation inProceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  18. Article
  19. Review
  20. Within-host evolution of the gut microbiome.Current opinion in microbiology · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Natasha A Bencivenga-BarryDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, Connecticut, USA.
Bentley LimDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, Connecticut, USA.
Carmen M HerreraDepartment of Infectious Diseases, University of Georgia at Athens, College of Veterinary Medicine, Athens, Georgia, USA.
M Stephen TrentDepartment of Infectious Diseases, University of Georgia at Athens, College of Veterinary Medicine, Athens, Georgia, USA.
Andrew L GoodmanDepartment of Microbial Pathogenesis, Yale University School of Medicine, New Haven, Connecticut, USA andrew.goodman@yale.edu.ORCID 0000-0001-7599-3471
Yale University · USUniversity of Georgia · US

Funding

Yale Clinical and Translational Science Award (U Component)UL1TR001863 · NCATS · YALE UNIVERSITY · PI John H. Krystal, LUCILA OHNO-MACHADO · 2016 to 2026
$102.9M
Systems Biology of Microbiome-mediated Resilience to Antibiotic-resistant PathogensU01AI124275 · NIAID · SLOAN-KETTERING INST CAN RESEARCH · PI PAMER, ERIC G., XAVIER, JOAO · 2016 to 2020
$8.9M
Causes and consequences of interpersonal microbial variationR35GM118159 · NIGMS · YALE UNIVERSITY · PI Andrew L Goodman · 2016 to 2026
$5.6M
Development of a novel vaccine platform: Surface Antigen/Adjuvant Vaccine Engineering (SAAVE)R01AI129940 · NIAID · UNIVERSITY OF GEORGIA · PI TRENT, MICHAEL STEPHEN · 2017 to 2021
$3.3M
The Outer Surface of Vibrio CholeraeR01AI076322 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI TRENT, MICHAEL STEPHEN · 2008 to 2017
$3.2M
Microbiome origins and insulin regulatory responses of the short chain fatty acid acetateR01DK114793 · NIDDK · YALE UNIVERSITY · PI GOODMAN, ANDREW L, SHULMAN, GERALD I · 2018 to 2021
$2.4M
Molecular mechanisms required for the maintenance of the gram-negative outer membraneR01AI138576 · NIAID · UNIVERSITY OF GEORGIA · PI TRENT, MICHAEL STEPHEN · 2018 to 2022
$2.0M
The Outer Surface of Vibrio choleraeR56AI076322 · NIAID · UNIVERSITY OF TEXAS AT AUSTIN · PI TRENT, MICHAEL STEPHEN · 2013 to 2013
$384k
Howard Hughes Medical InstituteNCATS NIH HHS UL1 TR001863NIAID NIH HHS R01 AI076322NIAID NIH HHS R01 AI129940NIAID NIH HHS R01 AI138576NIAID NIH HHS R56 AI076322NIAID NIH HHS U01 AI124275NIDDK NIH HHS R01 DK114793NIGMS NIH HHS R35 GM118159
6 · The paper itself

Abstract

PubMed holds no abstract for this paper.

Indexed as

Anti-Bacterial AgentsBacterial ProteinsBacteroidesBacteroides fragilisGastrointestinal MicrobiomeGastrointestinal TractHumansMicrobiotaPolymyxin BAnti-Bacterial AgentsBacterial ProteinsPolymyxin Bantimicrobial peptidesBacteroidesgeneticsmicrobiome

Identifiers

PMID31712278
PMCPMC6964735
OpenAlexW2989466399

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.