Evidence map›Paper›PMID 31712094›Full record

ArticleJournal of virological methods2020

Validation of specific quantitative real-time RT-PCR assay panel for Infectious Bronchitis using synthetic DNA standards and clinical specimens.

Jongseo Mo, Michael Angelichio, Lisa Gow, Valerie Leathers, Mark W Jackwood

Open access · hybridAbstract readValidation Study
In one paragraph

Article in Journal of virological methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jongseo MoPoultry Diagnostic and Research Center, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens GA, United States.
Michael AngelichioIDEXX Laboratories, Inc., One IDEXX Drive, Westbrook, ME, United States.
Lisa GowIDEXX Laboratories, Inc., One IDEXX Drive, Westbrook, ME, United States.
Valerie LeathersIDEXX Laboratories, Inc., One IDEXX Drive, Westbrook, ME, United States.
Mark W JackwoodPoultry Diagnostic and Research Center, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens GA, United States. Electronic address: mjackwoo@uga.edu.
IDEXX Laboratories (United States) · USUniversity of Georgia · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Infectious bronchitis (IB) is a highly contagious upper respiratory tract disease of chickens caused by infectious bronchitis virus (IBV), which has various serotypes that do not cross-protect. Vaccine control strategies for this virus are only effective when designed around the currently circulating serotypes. It is essential to not only rapidly detect IBV but also to identify the type of virus causing disease. Six TaqMan™-based quantitative real-time RT-PCR assays (Universal, Ark, Mass, DE/GA98, GA07, GA08) were developed and examined the sensitivity and specificity for each assay. Assays were developed targeting the hypervariable region in the S1 gene subunit. The analytical sensitivity of TaqMan™-based quantitative real-time RT-PCR assays (qRT-PCR) assays was evaluated using synthetic DNA standards that were identical with the target sequence and specificity was further validated using clinical and biological specimens. All developed assays performed equivalently when using synthetic DNA templates as standard material, as it achieved linearity over a 5 log

Indexed as

AnimalsBirdsCoronavirus InfectionsDNA PrimersDNA ProbesDNA, ViralInfectious bronchitis virusLimit of DetectionReal-Time Polymerase Chain ReactionRetrospective StudiesSensitivity and SpecificityDNA PrimersDNA ProbesDNA, ViralIBVInfectious bronchitis virusqRT-PCRQuantitative RT-PCR

Identifiers

PMID31712094
PMCPMC7113781
OpenAlexW2985600168

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.