Evidence map›Paper›PMID 31711424›Full record

ArticleBMC plant biology2019

PdWND3A, a wood-associated NAC domain-containing protein, affects lignin biosynthesis and composition in Populus.

Yongil Yang, Chang Geun Yoo, William Rottmann, Kimberly A Winkeler, Cassandra M Collins, Lee E Gunter, Sara S Jawdy, Xiaohan Yang, Yunqiao Pu, Arthur J Ragauskas and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 26 papers.

0numbers the graph read from it
0cells of the map it votes in
26citing papers in PubMed
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

26 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
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  5. Identification and Functional Studies on the Role ofInternational journal of molecular sciences · 2024
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  7. TheInternational journal of molecular sciences · 2023
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  10. Review
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  12. Review
  13. Review
  14. Article
  15. Article
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  17. Article
  18. Review
  19. Heliyon · 2021
    Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 2 institutions in 1 country.

Yongil YangBioEnergy Science Center and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Chang Geun YooBioEnergy Science Center and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
William RottmannArborGen Inc., Ridgeville, SC, 29472, USA.
Kimberly A WinkelerArborGen Inc., Ridgeville, SC, 29472, USA.
Cassandra M CollinsArborGen Inc., Ridgeville, SC, 29472, USA.
Lee E GunterBioEnergy Science Center and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Sara S JawdyBioEnergy Science Center and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Xiaohan YangBioEnergy Science Center and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Yunqiao PuBioEnergy Science Center and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Arthur J RagauskasBioEnergy Science Center and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Gerald A TuskanBioEnergy Science Center and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA.
Jin-Gui ChenBioEnergy Science Center and Biosciences Division, Oak Ridge National Laboratory, Oak Ridge, TN, 37831, USA. chenj@ornl.gov.ORCID http://orcid.org/0000-0002-1752-4201
Oak Ridge National Laboratory · USOpGen (United States) · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundPlant secondary cell wall is a renewable feedstock for biofuels and biomaterials production. Arabidopsis VASCULAR-RELATED NAC DOMAIN (VND) has been demonstrated to be a key transcription factor regulating secondary cell wall biosynthesis. However, less is known about its role in the woody species.

resultsHere we report the functional characterization of Populus deltoides WOOD-ASSOCIATED NAC DOMAIN protein 3 (PdWND3A), a sequence homolog of Arabidopsis VND4 and VND5 that are members of transcription factor networks regulating secondary cell wall biosynthesis. PdWND3A was expressed at higher level in the xylem than in other tissues. The stem tissues of transgenic P. deltoides overexpressing PdWND3A (OXPdWND3A) contained more vessel cells than that of wild-type plants. Furthermore, lignin content and lignin monomer syringyl and guaiacyl (S/G) ratio were higher in OXPdWND3A transgenic plants than in wild-type plants. Consistent with these observations, the expression of FERULATE 5-HYDROXYLASE1 (F5H1), encoding an enzyme involved in the biosynthesis of sinapyl alcohol (S unit monolignol), was elevated in OXPdWND3A transgenic plants. Saccharification analysis indicated that the rate of sugar release was reduced in the transgenic plants. In addition, OXPdWND3A transgenic plants produced lower amounts of biomass than wild-type plants.

conclusionsPdWND3A affects lignin biosynthesis and composition and negatively impacts sugar release and biomass production.

Indexed as

Gene Expression ProfilingLigninPlant ProteinsPlants, Genetically ModifiedPopulusTranscription FactorsLigninPlant ProteinsTranscription FactorsF5HLigninPopulusSaccharificationS/G ratioSinapyl alcoholVND

Identifiers

PMID31711424
PMCPMC6849256
OpenAlexW2986820960

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.