Evidence map›Paper›PMID 31711411›Full record

ArticleBMC genomics2019

Comparative transcriptional analysis of Capsicum flower buds between a sterile flower pool and a restorer flower pool provides insight into the regulation of fertility restoration.

Bingqiang Wei, Lanlan Wang, Paul W Bosland, Gaoyuan Zhang, Ru Zhang

Open access · goldAbstract readComparative Study
In one paragraph

Article in BMC genomics, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 24 citations in OpenAlex.

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  4. Conjunctive Analyses of BSA-Seq and BSR-Seq Unveil theInternational journal of molecular sciences · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Bingqiang WeiCollege of Horticulture, Gansu Agricultural University, Lanzhou, 730070, China. bqwei@gsau.edu.cn.ORCID http://orcid.org/0000-0003-3119-5712
Lanlan WangVegetable Institute, Gansu Academy of Agricultural Sciences, Lanzhou, 730070, China.
Paul W BoslandCollege of Agriculture, Consumer, and Environmental Sciences, New Mexico State University, Las Cruces, 88001, USA.
Gaoyuan ZhangCollege of Horticulture, Gansu Agricultural University, Lanzhou, 730070, China.
Ru ZhangVegetable Institute, Gansu Academy of Agricultural Sciences, Lanzhou, 730070, China.
Gansu Academy of Agricultural Sciences · CNGansu Agricultural University · CNNew Mexico State University · US

Funding

National Natural Science Foundation of China 31560555National Natural Science Foundation of China 31760572
6 · The paper itself

Abstract

backgroundCytoplasmic male sterility (CMS) and its restoration of fertility (Rf) system is an important mechanism to produce F

resultsA total of 2274 genes were up-regulated in R1 as compared to 8A, and 1490 genes were up-regulated in RP as compared to SP. There were 891 genes up-regulated in both restorer accessions, R1 and RP, as compared to both sterile accessions, 8A and SP. Through annotation and expression analysis of co-up-regulated expressed genes, eight genes related to fertility restoration were selected. These genes encode putative fructokinase, phosphatidylinositol 4-phosphate 5-kinase, pectate lyase, exopolygalacturonase, pectinesterase, cellulose synthase, fasciclin-like arabinogalactan protein and phosphoinositide phospholipase C. In addition, a phosphatidylinositol signaling system and an inositol phosphate metabolism related to the fertility restorer of CMS were ranked as the most likely pathway for affecting the restoration of fertility in pepper.

conclusionsOur study revealed that eight genes were related to the restoration of fertility, which provides new insight into understanding the molecular mechanism of fertility restoration of CMS in Capsicum.

Indexed as

Gene Expression Regulation, PlantCapsicumFertilityFlowersGene Expression ProfilingGene OntologyMetabolic Networks and PathwaysPlant InfertilitySequence Analysis, RNATranscriptomeCMSFertility restorerPepperRNA-sequencing

Identifiers

PMID31711411
PMCPMC6849218
OpenAlexW2987322421

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.