Evidence map›Paper›PMID 31711157›Full record

ReviewBriefings in bioinformatics2020

Computational/in silico methods in drug target and lead prediction.

Francis E Agamah, Gaston K Mazandu, Radia Hassan, Christian D Bope, Nicholas E Thomford, Anita Ghansah, Emile R Chimusa

Abstract readReview
In one paragraph

Review in Briefings in bioinformatics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 124 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
124citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

124 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Meta-analysis ofFrontiers in cellular and infection microbiology · 2025
    Pooled it
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64 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Francis E AgamahDivision of Human Genetics, Department of Pathology, University of Cape Town, Observatory 7925, South Africa.
Gaston K MazanduDivision of Human Genetics, Department of Pathology, University of Cape Town, Observatory 7925, South Africa.
Radia HassanDivision of Human Genetics, Department of Pathology, University of Cape Town, Observatory 7925, South Africa.
Christian D BopeDivision of Human Genetics, Department of Pathology, University of Cape Town, Observatory 7925, South Africa.
Nicholas E ThomfordDivision of Human Genetics, Department of Pathology, University of Cape Town, Observatory 7925, South Africa.
Anita GhansahNoguchi Memorial Institute for Medical Research, College of Health Sciences, University of Ghana, PO Box LG 581, Legon, Ghana.
Emile R ChimusaDivision of Human Genetics, Department of Pathology, University of Cape Town, Observatory 7925, South Africa.

Funding

H3ABioNet: informatics solutions for H3AfricaU24HG006941 · NHGRI · UNIVERSITY OF CAPE TOWN · PI MULDER, NICOLA · 2017 to 2021
$12.9M
Sickle Africa Data Coordinating CenterU24HL135600 · NHLBI · UNIVERSITY OF CAPE TOWN · PI MULDER, NICOLA, WONKAM, AMBROISE · 2017 to 2025
$8.6M
Exploring Perspectives on Genomics and Sickle Cell Public Health InterventionsU01HG007459 · NHGRI · UNIVERSITY OF CAPE TOWN · PI WONKAM, AMBROISE · 2013 to 2016
$622k
NHGRI NIH HHS U01 HG007459NHGRI NIH HHS U24 HG006941NHLBI NIH HHS U24 HL135600Wellcome TrustWellcome Trust 107740/Z/15/Z
6 · The paper itself

Abstract

Drug-like compounds are most of the time denied approval and use owing to the unexpected clinical side effects and cross-reactivity observed during clinical trials. These unexpected outcomes resulting in significant increase in attrition rate centralizes on the selected drug targets. These targets may be disease candidate proteins or genes, biological pathways, disease-associated microRNAs, disease-related biomarkers, abnormal molecular phenotypes, crucial nodes of biological network or molecular functions. This is generally linked to several factors, including incomplete knowledge on the drug targets and unpredicted pharmacokinetic expressions upon target interaction or off-target effects. A method used to identify targets, especially for polygenic diseases, is essential and constitutes a major bottleneck in drug development with the fundamental stage being the identification and validation of drug targets of interest for further downstream processes. Thus, various computational methods have been developed to complement experimental approaches in drug discovery. Here, we present an overview of various computational methods and tools applied in predicting or validating drug targets and drug-like molecules. We provide an overview on their advantages and compare these methods to identify effective methods which likely lead to optimal results. We also explore major sources of drug failure considering the challenges and opportunities involved. This review might guide researchers on selecting the most efficient approach or technique during the computational drug discovery process.

Indexed as

Drug Delivery SystemsBiomarkersComputational BiologyComputer SimulationDrug DiscoveryMachine LearningMolecular Docking SimulationBiomarkersdockingdrug targetsgenomicsmachine learningPharmacogenomics

Identifiers

PMID31711157
PMCPMC7673338

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.