Evidence map›Paper›PMID 31710609›Full record

ArticlePloS one2019

Genome-wide identification and gene expression analysis of SOS family genes in tuber mustard (Brassica juncea var. tumida).

Chunhong Cheng, Yuanmei Zhong, Qing Wang, Zhaoming Cai, Diandong Wang, Changman Li

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
0.9field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Unraveling the Contribution ofInternational journal of molecular sciences · 2024
    Article
  7. Genome-wide characterization ofFrontiers in plant science · 2023
    Article
  8. HvNCX, a prime candidate gene for the novel qualitative locus qS7.1 associated with salinity tolerance in barley.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2023
    Article
  9. Review
  10. Identification of miRNA and their target genes inPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Article
  11. Conservation and divergence of thePhysiology and molecular biology of plants : an international journal of functional plant biology · 2021
    Article
  12. Effect of Overexpression ofFrontiers in plant science · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Chunhong ChengSchool of Advanced Agriculture and Bioengineering, Yangtze Normal University, Chongqing, P.R. China.
Yuanmei ZhongSchool of Advanced Agriculture and Bioengineering, Yangtze Normal University, Chongqing, P.R. China.
Qing WangSchool of Advanced Agriculture and Bioengineering, Yangtze Normal University, Chongqing, P.R. China.
Zhaoming CaiSchool of Advanced Agriculture and Bioengineering, Yangtze Normal University, Chongqing, P.R. China.
Diandong WangSchool of Advanced Agriculture and Bioengineering, Yangtze Normal University, Chongqing, P.R. China.
Changman LiSchool of Advanced Agriculture and Bioengineering, Yangtze Normal University, Chongqing, P.R. China.ORCID 0000-0002-0068-2270
Yangtze Normal University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The Salt Overly Sensitive (SOS) pathway in Arabidopsis thaliana plays important roles in maintaining appropriate ion homeostasis in the cytoplasm and regulating plant tolerance to salinity. However, little is known about the details regarding SOS family genes in the tuber mustard crop (Brassica juncea var. tumida). Here, 12 BjSOS family genes were identified in the B. juncea var. tumida genome including two homologous genes of SOS1, one and three homologs of SOS2 and SOS3, two homologs of SOS4, two homologs of SOS5 and two homologs of SOS6, respectively. The results of conserved motif analysis showed that these SOS homologs contained similar protein structures. By analyzing the cis-elements in the promoters of those BjSOS genes, several hormone- and stress-related cis-elements were found. The results of gene expression analysis showed that the homologous genes were induced by abiotic stress and pathogen. These findings indicate that BjSOS genes play crucial roles in the plant response to biotic and abiotic stresses. This study provides valuable information for further investigations of BjSOS genes in tuber mustard.

Indexed as

Gene Expression Regulation, PlantGenome, PlantComputational BiologyGene Expression ProfilingMustard PlantPlant ProteinsStress, PhysiologicalPlant Proteins

Identifiers

PMID31710609
PMCPMC6844470
OpenAlexW2983883525

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.