Evidence map›Paper›PMID 31709752›Full record

ArticleEMBO reports2020

pH-controlled histone acetylation amplifies melanocyte differentiation downstream of MITF.

Desingu Ayyappa Raja, Vishvabandhu Gotherwal, Shaunak A Burse, Yogaspoorthi J Subramaniam, Farina Sultan, Archana Vats, Hemlata Gautam, Babita Sharma, Sachin Sharma, Archana Singh and 3 more

Open access · greenAbstract read
In one paragraph

Article in EMBO reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed, 1 pooled it
1.8field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 1 synthesis or guideline pooled it, 34 citations in OpenAlex.

  1. Pooled it
  2. Intracellular pH dynamics promotes zebrafish larval tail regeneration.bioRxiv : the preprint server for biology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 1 institution in 1 country.

Desingu Ayyappa RajaCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.ORCID 0000-0002-0173-0465
Vishvabandhu GotherwalCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.
Shaunak A BurseCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.
Yogaspoorthi J SubramaniamCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.ORCID 0000-0002-7822-5731
Farina SultanCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.
Archana VatsCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.
Hemlata GautamCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.
Babita SharmaCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.
Sachin SharmaCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.
Archana SinghCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.
Sridhar SivasubbuCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.
Rajesh S GokhaleCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.ORCID 0000-0001-6597-2685
Vivek T NatarajanCSIR-Institute of Genomics and Integrative Biology, New Delhi, India.ORCID 0000-0002-8537-5471
Institute of Genomics and Integrative Biology · IN

Funding

HIV/AIDS RISK REDUCTION PROGRAM FOR BELIZEAN ADOLESCENTSR03TW001118 · FIC · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI MORISKY, DONALD E · 1999 to 2000
$40k
CONTROL OF DNA METHYLATION IN EUKARYOTESF06TW001810 · FIC · UNIVERSITY OF OREGON · PI SELKER, ERIC U. · 1992 to 1992
–
ADVANCED STUDIES IN BIOLOGYF15TW000302 · FIC · U.S. NATIONAL INSTITUTES OF HEALTH · PI BROWN, DONALD D · 1986 to 1986
–
Council for scientific and Industrial Research (CSIR) BSC0302Council for scientific and Industrial Research (CSIR) MLP1810Council for scientific and Industrial Research (CSIR) OLP1118Department of Biotechnology, Ministry of Science and Technology (DBT) GAP0182
6 · The paper itself

Abstract

Tanning response and melanocyte differentiation are mediated by the central transcription factor MITF. This involves the rapid and selective induction of melanocyte maturation genes, while concomitantly the expression of other effector genes is maintained. In this study, using cell-based and zebrafish model systems, we report on a pH-mediated feed-forward mechanism of epigenetic regulation that enables selective amplification of the melanocyte maturation program. We demonstrate that MITF activation directly elevates the expression of the enzyme carbonic anhydrase 14 (CA14). Nuclear localization of CA14 leads to an increase of the intracellular pH, resulting in the activation of the histone acetyl transferase p300/CBP. In turn, enhanced H3K27 histone acetylation at selected differentiation genes facilitates their amplified expression via MITF. CRISPR-mediated targeted missense mutation of CA14 in zebrafish results in the formation of immature acidic melanocytes with decreased pigmentation, establishing a central role for this mechanism during melanocyte differentiation in vivo. Thus, we describe an epigenetic control system via pH modulation that reinforces cell fate determination by altering chromatin dynamics.

Indexed as

Microphthalmia-Associated Transcription FactorZebrafishAcetylationAnimalsCell DifferentiationEpigenesis, GeneticHistonesHydrogen-Ion ConcentrationMelanocytesPigmentationHistonesMicrophthalmia-Associated Transcription Factorepigenetics and zebrafishhistone acetylationp300/CBPpH regulationpigmentation

Identifiers

PMID31709752
PMCPMC6945066
OpenAlexW2983936793

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.