Evidence map›Paper›PMID 31708955›Full record

ArticleFrontiers in plant science2019

Genomic Selection in Rubber Tree Breeding: A Comparison of Models and Methods for Managing G×E Interactions.

Livia M Souza, Felipe R Francisco, Paulo S Gonçalves, Erivaldo J Scaloppi Junior, Vincent Le Guen, Roberto Fritsche-Neto, Anete P Souza

Abstract read
In one paragraph

Article in Frontiers in plant science, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

  1. Article
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  3. Article
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  5. Article
  6. Genomic selection in tropical perennial crops and plantation trees: a review.Molecular breeding : new strategies in plant improvement · 2022
    Review
  7. Article
  8. Recent insights on gene expression studies onPhysiology and molecular biology of plants : an international journal of functional plant biology · 2022
    Review
  9. Article
  10. Article
  11. Review
  12. Review
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  15. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Livia M SouzaMolecular Biology and Genetic Engineering Center (CBMEG), University of Campinas (UNICAMP), Campinas, Brazil.
Felipe R FranciscoMolecular Biology and Genetic Engineering Center (CBMEG), University of Campinas (UNICAMP), Campinas, Brazil.
Paulo S GonçalvesCenter of Rubber Tree and Agroforestry Systems, Agronomic Institute (IAC), Votuporanga, Brazil.
Erivaldo J Scaloppi JuniorCenter of Rubber Tree and Agroforestry Systems, Agronomic Institute (IAC), Votuporanga, Brazil.
Vincent Le GuenCentre de Coopération Internationale en Recherche Agronomique pour le Développement (CIRAD), UMR AGAP, Montpellier, France.
Roberto Fritsche-NetoDepartamento de Genética, Escola Superior de Agricultura "Luiz de Queiroz" Universidade de São Paulo (ESALQ/USP), Piracicaba, Brazil.
Anete P SouzaMolecular Biology and Genetic Engineering Center (CBMEG), University of Campinas (UNICAMP), Campinas, Brazil.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Several genomic prediction models combining genotype × environment (G×E) interactions have recently been developed and used for genomic selection (GS) in plant breeding programs. G×E interactions reduce selection accuracy and limit genetic gains in plant breeding. Two data sets were used to compare the prediction abilities of multienvironment G×E genomic models and two kernel methods. Specifically, a linear kernel, or GB (genomic best linear unbiased predictor [GBLUP]), and a nonlinear kernel, or Gaussian kernel (GK), were used to compare the prediction accuracies (PAs) of four genomic prediction models: 1) a single-environment, main genotypic effect model (SM); 2) a multienvironment, main genotypic effect model (MM); 3) a multienvironment, single-variance G×E deviation model (MDs); and 4) a multienvironment, environment-specific variance G×E deviation model (MDe). We evaluated the utility of genomic selection (GS) for 435 individual rubber trees at two sites and genotyped the individuals

Indexed as

breedinggenotypingHevea brasiliensismultienvironmentsingle nucleotide

Identifiers

PMID31708955
PMCPMC6824234

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.