Evidence map›Paper›PMID 31707043›Full record

ReviewBiochimica et biophysica acta. Gene regulatory mechanisms

Structures of SF3b1 reveal a dynamic Achilles heel of spliceosome assembly: Implications for cancer-associated abnormalities and drug discovery.

Debanjana Maji, Alan Grossfield, Clara L Kielkopf

Abstract readReview
In one paragraph

Review in Biochimica et biophysica acta. Gene regulatory mechanisms. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
1.0field-weighted citation impact, top 23% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
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  11. Research progress and therapeutic prospect of PHF5A acting as a new target for malignant tumors.Zhejiang da xue xue bao. Yi xue ban = Journal of Zhejiang University. Medical sciences · 2022
    Review
  12. [Screening of drugs that selectively inhibit uveal melanoma cells with SF3B1 mutations].Nan fang yi ke da xue xue bao = Journal of Southern Medical University · 2021
    Article
  13. Article
  14. Article
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  17. The SF3b complex: splicing and beyond.Cellular and molecular life sciences : CMLS · 2020
    Review
  18. RNA-binding proteins in tumor progression.Journal of hematology & oncology · 2020
    Review
  19. RNA structure and splicing regulation.Biochimica et biophysica acta. Gene regulatory mechanisms
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Debanjana MajiDepartment of Biochemistry and Biophysics, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA.
Alan GrossfieldDepartment of Biochemistry and Biophysics, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA.
Clara L KielkopfDepartment of Biochemistry and Biophysics, University of Rochester School of Medicine and Dentistry, Rochester, NY 14642, USA. Electronic address: clara_kielkopf@urmc.rochester.edu.
University of Rochester · US

Funding

Molecular Recognition During Pre-mRNA SplicingR01GM070503 · NIGMS · UNIVERSITY OF ROCHESTER · PI KIELKOPF, CLARA · 2004 to 2025
$7.9M
Structural Control of Human Co-factors for Retroviral Gene ExpressionR01GM117005 · NIGMS · UNIVERSITY OF ROCHESTER · PI KIELKOPF, CLARA · 2016 to 2019
$1.3M
NIGMS NIH HHS R01 GM070503NIGMS NIH HHS R01 GM117005
6 · The paper itself

Abstract

The pre-mRNA splicing factor SF3b1 exhibits recurrent mutations among hematologic malignancies and cancers, and consequently is a major therapeutic target of clinically-advanced spliceosome inhibitors. In this review, we highlight and rigorously analyze emerging views of SF3b1 conformational transitions, including the human SF3b particle either in isolation or bound to spliceosome inhibitors, and human or yeast spliceosome assemblies. Among spliceosome states characterized to date, an SF3b1 α-helical superhelix significantly closes to surround a U2 small nuclear RNA duplex with the pre-mRNA branch point sequence. The SF3b1 torus is locally unwound at an active site adenosine, whereas protein cofactors appear to stabilize overall closure in the spliceosome. Network analyses demonstrates that the natural SF3b1 dynamics mimic its conformational change in the spliceosome, raising the possibility of conformational selection underpinning spliceosome assembly. These dynamic SF3b1 conformations have consequences for gatekeeping of spliceosome assembly and therapeutic targeting of its cancer-associated dysfunction.

Indexed as

MutationCatalytic DomainDrug DiscoveryHumansModels, MolecularNeoplasmsPhosphoproteinsProtein Structure, SecondaryRNA PrecursorsRNA, Small NuclearRNA Splicing FactorsSpliceosomesPhosphoproteinsRNA PrecursorsRNA, Small NuclearRNA Splicing FactorsSF3B1 protein, humanU2 small nuclear RNAHEAT repeatHsh155Myelodysplastic syndromePre-mRNA splicing, cancerRibonucleoprotein structure

Identifiers

PMID31707043
PMCPMC6880240
OpenAlexW2987012959

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.