Evidence map›Paper›PMID 31706908›Full record

ArticleJournal of virological methods2020

Mycoplasma detection in a historical arbovirus repository: Commercial kit comparison and implications for improved repository management.

Brandy J Russell, Kalanthe Horiuchi, Jason O Velez, Christin H Goodman, Barbara W Johnson

Open access · hybridAbstract read
In one paragraph

Article in Journal of virological methods, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 35% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 5 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Brandy J RussellDivision of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, CO, United States. Electronic address: bmk8@cdc.gov.
Kalanthe HoriuchiDivision of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, CO, United States.
Jason O VelezDivision of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, CO, United States.
Christin H GoodmanDivision of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, CO, United States.
Barbara W JohnsonDivision of Vector-Borne Diseases, Centers for Disease Control and Prevention, Fort Collins, CO, United States.
Centers for Disease Control and Prevention · US

Funding

Intramural CDC HHS CC999999
6 · The paper itself

Abstract

The Centers for Disease Control and Prevention, Arbovirus Reference Collection (ARC) contains viral isolates from both environmental and human sources that are maintained in the laboratory through passage in suckling mouse brain and/or vertebrate and invertebrate cell culture. There has been increased concern regarding the effect of mycoplasma contamination on virus growth and its impact on research and phenotypic analysis. Therefore, quality control testing of virus preparations has become a routine part of the ARC quality assurance program. We compared the performance of three kits - the PCR Mycoplasma Detection Kit (ABM), the VenorGem Mycoplasma Detection Kit (Sigma), and the MycoAlert Mycoplasma Detection Kit (Lonza) - against a reference mycoplasma detection assay from the American Tissue Culture Collection (ATCC) using 744 virus preparations in the ARC, representing 721 unique viruses comprising twelve families and unclassified viruses. We found the ABM kit had the highest sensitivity and specificity, followed by the Sigma kit and Lonza kit, when compared to the ATCC kit. An increase in false positives was observed for the Lonza kit for preparations recently passaged in suckling mouse. Our data supports previously reported observations; that once introduced a specific species of mycoplasma is maintained within a lab.

Indexed as

ArbovirusesQuality ControlAnimalsBiological Specimen BanksCell Culture TechniquesCell LineDNA, BacterialHumansMycoplasmaRNA, ViralVirologyDNA, BacterialRNA, ViralArbovirusMycoplasmaRepository

Identifiers

PMID31706908
PMCPMC12704585
OpenAlexW2983155050

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.