Evidence map›Paper›PMID 31706293›Full record

ArticleBMC plant biology2019

Molecular cloning and metabolomic characterization of the 5-enolpyruvylshikimate-3-phosphate synthase gene from Baphicacanthus cusia.

Jian Yu, Yihan Zhang, Shuju Ning, Qi Ye, Hexin Tan, Ruibing Chen, Qitao Bu, Rui Zhang, Peimin Gong, Xiaoli Ma and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC plant biology, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.3field-weighted citation impact, top 40% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. High-Quality Genome of the Medicinal PlantFrontiers in plant science · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 1 country.

Jian YuCollege of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, People's Republic of China.
Yihan ZhangDepartment of Pharmaceutical Changzheng Hosipital, Second Military Medical University, Shanghai, 200433, People's Republic of China.
Shuju NingCollege of Crop Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, People's Republic of China.
Qi YeCollege of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, People's Republic of China.
Hexin TanDepartment of Pharmaceutical Botany, School of Pharmacy, Second Military Medical University, Shanghai, 200433, People's Republic of China.
Ruibing ChenDepartment of Pharmaceutical Botany, School of Pharmacy, Second Military Medical University, Shanghai, 200433, People's Republic of China.
Qitao BuDepartment of Pharmaceutical Botany, School of Pharmacy, Second Military Medical University, Shanghai, 200433, People's Republic of China.
Rui ZhangDepartment of Pharmaceutical Botany, School of Pharmacy, Second Military Medical University, Shanghai, 200433, People's Republic of China.
Peimin GongCollege of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, People's Republic of China.
Xiaoli MaCollege of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, People's Republic of China.
Lei ZhangDepartment of Pharmaceutical Botany, School of Pharmacy, Second Military Medical University, Shanghai, 200433, People's Republic of China. zhanglei@smmu.edu.cn.
Daozhi WeiCollege of Life Science, Fujian Agriculture and Forestry University, Fuzhou, 350002, People's Republic of China. weidz888@sohu.com.ORCID http://orcid.org/0000-0002-3776-3023
Second Military Medical University · CNFujian Agriculture and Forestry University · CNHainan Marine Monitoring and Forecasting Center · CN

Funding

National Natural Science Foundation of China 31670292National Natural Science Foundation of China 81573517National Natural Science Foundation of China U1405215
6 · The paper itself

Abstract

backgroundIndigo alkaloids, such as indigo, indirubin and its derivatives, have been identified as effective antiviral compounds in Baphicacanthus cusia. Evidence suggests that the biosynthesis of indigo alkaloids in plants occurs via the shikimate pathway. The enzyme 5-enolpyruvylshikimate-3-phosphate synthase (EPSPS) is involved in plant metabolism; however, its underlying putative mechanism of regulating the production of indigo alkaloids is currently unknown.

resultsOne gene encoding EPSPS was isolated from B. cusia. Quantitative real-time PCR analysis revealed that BcEPSPS was expressed at the highest level in the stem and upregulated by methyl jasmonate (MeJA), salicylic acid (SA) and abscisic acid (ABA) treatment. The results of subcellular localization indicated that BcEPSPS is mainly expressed in both the plastids and cytosol, which has not been previously reported. An enzyme assay revealed that the heterogeneously expressed BcEPSPS protein catalysed the generation of 5-enolpyruvyl shikimate-3-phosphate. The overexpression of BcEPSPS in Isatis indigotica hairy roots resulted in the high accumulation of indigo alkaloids, such as indigo, secologanin, indole and isorhamnetin.

conclusionsThe function of BcEPSPS in catalysing the production of EPSP and regulating indigo alkaloid biosynthesis was revealed, which provided a distinct view of plant metabolic engineering. Our findings have practical implications for understanding the effect of BcEPSPS on active compound biosynthesis in B. cusia.

Indexed as

Gene Expression Regulation, Plant3-Phosphoshikimate 1-CarboxyvinyltransferaseAcanthaceaeAlkaloidsAmino Acid SequenceMetabolomicsPhylogenyPlant ProteinsSequence AlignmentUp-Regulation3-Phosphoshikimate 1-CarboxyvinyltransferaseAlkaloidsPlant Proteins5-enolpyruvylshikimate-3-phosphate synthaseBaphicacanthus cusiaEnzyme assayIndigo alkaloidsMolecular cloningPlant metabolic engineering

Identifiers

PMID31706293
PMCPMC6842527
OpenAlexW2983680369

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.