Evidence map›Paper›PMID 31705802›Full record

ArticleThe New phytologist2020

PHYTOCHROME INTERACTING FACTOR 7 is important for early responses to elevated temperature in Arabidopsis seedlings.

Anne-Sophie Fiorucci, Vinicius Costa Galvão, Yetkin Çaka Ince, Alessandra Boccaccini, Anupama Goyal, Laure Allenbach Petrolati, Martine Trevisan, Christian Fankhauser

Open access · hybridAbstract read
In one paragraph

Article in The New phytologist, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 84 papers.

0numbers the graph read from it
0cells of the map it votes in
84citing papers in PubMed
28.8field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

84 citing papers in PubMed, 202 citations in OpenAlex.

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  20. Clock protein LHY targetsScience advances · 2024
    Article

24 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 1 institution in 1 country.

Anne-Sophie FiorucciFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne, CH-1015, Switzerland.ORCID 0000-0002-3254-5967
Vinicius Costa GalvãoFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne, CH-1015, Switzerland.ORCID 0000-0002-0973-222X
Yetkin Çaka InceFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne, CH-1015, Switzerland.ORCID 0000-0002-4395-8599
Alessandra BoccacciniFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne, CH-1015, Switzerland.ORCID 0000-0001-8698-4722
Anupama GoyalFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne, CH-1015, Switzerland.
Laure Allenbach PetrolatiFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne, CH-1015, Switzerland.ORCID 0000-0002-9074-5350
Martine TrevisanFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne, CH-1015, Switzerland.ORCID 0000-0002-6610-6954
Christian FankhauserFaculty of Biology and Medicine, Centre for Integrative Genomics, University of Lausanne, Génopode Building, Lausanne, CH-1015, Switzerland.ORCID 0000-0003-4719-5901
University of Lausanne · CH

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In response to elevated ambient temperature Arabidopsis thaliana seedlings display a thermomorphogenic response that includes elongation of hypocotyls and petioles. Phytochrome B and cryptochrome 1 are two photoreceptors also playing a role in thermomorphogenesis. Downstream of both environmental sensors PHYTOCHROME INTERACTING FACTOR 4 (PIF4) is essential to trigger this response at least in part through the production of the growth promoting hormone auxin. Using a genetic approach, we identified PHYTOCHROME INTERACTING FACTOR 7 (PIF7) as a novel player for thermomorphogenesis and compared the phenotypes of pif7 and pif4 mutants. We investigated the role of PIF7 during temperature-regulated gene expression and the regulation of PIF7 transcript and protein by temperature. Furthermore, pif7 and pif4 loss-of-function mutants were similarly unresponsive to increased temperature. This included hypocotyl elongation and induction of genes encoding auxin biosynthetic or signalling proteins. PIF7 bound to the promoters of auxin biosynthesis and signalling genes. In response to temperature elevation PIF7 transcripts decreased while PIF7 protein levels increased rapidly. Our results reveal the importance of PIF7 for thermomorphogenesis and indicate that PIF7 and PIF4 likely depend on each other possibly by forming heterodimers. Elevated temperature rapidly enhances PIF7 protein accumulation, which may contribute to the thermomorphogenic response.

Indexed as

ArabidopsisArabidopsis ProteinsPhytochromeBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsFactor VIIGene Expression Regulation, PlantHypocotylSeedlingsTemperatureArabidopsis ProteinsBasic Helix-Loop-Helix ProteinsDNA-Binding ProteinsFactor VIIPhytochromePIF7 protein, ArabidopsisArabidopsis thalianaauxinPIF4PIF7thermomorphogenesis

Identifiers

PMID31705802
PMCPMC7064998
OpenAlexW2989377663

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.