Evidence map›Paper›PMID 31705355›Full record

ArticleTropical animal health and production2020

Identification and genetic analysis of infectious bursal disease viruses from field outbreaks in Kerala, India.

D Nandhakumar, R Rajasekhar, G Logeshwaran, Chintu Ravishankar, Stephy Rose Sebastian, R Anoopraj, K Sumod, Binu K Mani, G Chaithra, Chandankar Vaidehi Deorao and 1 more

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Article in Tropical animal health and production, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 1 institution in 1 country.

D NandhakumarDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Lakkidi P.O., Pookode, Kerala, 673576, India.
R RajasekharDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Lakkidi P.O., Pookode, Kerala, 673576, India. rajasekhar@kavsu.ac.in.
G LogeshwaranDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Lakkidi P.O., Pookode, Kerala, 673576, India.
Chintu RavishankarDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Lakkidi P.O., Pookode, Kerala, 673576, India.
Stephy Rose SebastianDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Lakkidi P.O., Pookode, Kerala, 673576, India.
R AnooprajDepartment of Veterinary Pathology, College of Veterinary and Animal Sciences, Lakkidi P.O., Pookode, Kerala, 673576, India.
K SumodDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Lakkidi P.O., Pookode, Kerala, 673576, India.
Binu K ManiDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Lakkidi P.O., Pookode, Kerala, 673576, India.
G ChaithraDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Lakkidi P.O., Pookode, Kerala, 673576, India.
Chandankar Vaidehi DeoraoDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Lakkidi P.O., Pookode, Kerala, 673576, India.
Koshy JohnDepartment of Veterinary Microbiology, College of Veterinary and Animal Sciences, Lakkidi P.O., Pookode, Kerala, 673576, India.
Kerala Veterinary and Animal Sciences University · IN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Recurrent infectious bursal disease (IBD) outbreaks were reported in different regions of Kerala, India. This paper reports the comparative genetic analysis of the hypervariable region of the VP2 gene of IBD virus isolates from the field outbreaks in Kerala. In phylogenetic analysis, the obtained field isolates fall into genogroup 1 and 3. In genogroup 3, all vvIBDV isolates shared a common ancestor with other south Indian isolates but isolates 9/CVASP/IBDV, 10/CVASP/IBDV, 12/CVASP/IBDV, 14/CVASP/IBDV and 17/CVASP/IBDV are most recently evolved and are diverged from the south Indian isolates. The amino acid sequence of 22 isolates was analysed, out of which 18 had conserved amino acids which were characteristic of vvIBDV. All the vvIBDV isolates obtained in the study had phenylalanine and valine at the position 240 and 294, respectively, similar to recently evolved Indian IBDV isolate (MDI14). But we observed T269A and S299N mutations in the isolate 6/CVASP/IBDV, and it is the first report of such mutations at these positions in India IBDV isolates. The isolate 11/CVASP/IBDV had a unique mutation of V225A which is not yet reported in IBDV isolates. Two isolates (15/CVASP/IBDV and 18/CVASP/IBDV) were 100% amino acid similar to intermediate plus vaccine strain. The isolates 8/CVASP/IBDV/VP2 and 19/CVASP/IBDV had amino acids unique for the intermediate vaccine with mutations observed at H253Q and V256I in 19/CVASP/IBDV, T270A and novel mutation N279Y in isolate 8/CVASP/IBDV. These two isolates had non-virulent classical heptapeptide sequence 'SWSARGS'; nevertheless, they produce field outbreaks of IBD. This is the first report of genetic characterisation of IBDV in Kerala, India.

Indexed as

ChickensAnimalsBase SequenceBirnaviridae InfectionsDisease OutbreaksGenotypeIndiaInfectious bursal disease virusPhylogenyPoultry DiseasesAmino acid substitutionsHypervariable VP2 geneInfectious bursal disease virus (IBDV)Phylogenetic analysisReverse transcriptase polymerase chain reaction (RT-PCR)

Identifiers

PMID31705355
OpenAlexW2989529665

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.