Evidence map›Paper›PMID 31705223›Full record

ArticleEnvironmental monitoring and assessment2019

Isolation of nucleic acids using silicon dioxide powder as a tool for environmental monitoring.

Jacek Urbaniak, Daniel Janowski, Brayan Jacewski

Open access · hybridAbstract read
In one paragraph

Article in Environmental monitoring and assessment, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.1field-weighted citation impact, top 52% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 2 institutions in 2 countries.

Jacek UrbaniakDepartment of Botany and Plant Ecology, Wrocław University of Plant Sciences, pl. Grunwaldzki 24a, 50-363, Wrocław, Poland. jacek.urbaniak@upwr.edu.pl.ORCID http://orcid.org/0000-0002-1300-0873
Daniel JanowskiInstitute of Dendrobiology PAS, ul. Parkowa 5, 62-035, Kórnik, Poland.
Brayan JacewskiDepartment of Botany and Plant Ecology, Wrocław University of Plant Sciences, pl. Grunwaldzki 24a, 50-363, Wrocław, Poland.
Carnegie Department of Plant Biology · USInstitute of Dendrology · PL

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Isolation and purification of nucleic acids are basic laboratory procedures used in molecular analysis supporting determination of organisms in environmental monitoring. However, many different methods of isolation are commonly used, often being designed for a particular type of DNA extraction. While researchers commonly decide on commercial isolation kits for their ease of use and efficiency, they require large amounts of studied tissue, and the cost of purchasing such kits over a long run can be high. To provide an alternative to using commercial kits, we have developed a simple, rapid, cost-effective, and reliable protocol for DNA isolation from cultured fungi on slants and from dried fungal samples using silica particles (silicon dioxide powder) in chaotropic conditions. With the presented method, it is possible to isolate good-quality DNA from fungi in less than 1.5 h, using easily accessible chemicals. Compared with other methods employing CTAB or commercial kits, it allows fast, easy, and cheap DNA purification from two main sources of fungi routinely used for research. In addition to the method protocol, we also provide advice for further optimization of the isolation process to account for specific conditions, making the procedure more useful.

Indexed as

DNAEnvironmental MonitoringFungiNucleic AcidsSilicon DioxideDNANucleic AcidsSilicon DioxideDNAFungiMethodNucleic acidsPurificationSilicon dioxideSpecies

Identifiers

PMID31705223
PMCPMC6841745
OpenAlexW2984473137

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.