ArticleScientific data2019
Chromosome genome assembly and annotation of the yellowbelly pufferfish with PacBio and Hi-C sequencing data.
Article in Scientific data, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.
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Who cites it
18 citing papers in PubMed, 32 citations in OpenAlex.
- Chromosome-level genome assembly and annotation of the porcupine fish (Diodon hystrix).Scientific data · 2026Article
- Patterns and Processes of Genomic Evolution Inferred From the Ten Smallest Vertebrate Genomes.Advanced science (Weinheim, Baden-Wurttemberg, Germany) · 2025Article
- Construction of the graph genomes of Takifugu provides novel insights into the genomic mechanisms of population structure and migratory traits.BMC biology · 2025Article
- A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography.Molecular biology and evolution · 2024Article
- Improved high-quality reference genome of red drum facilitates the processes of resistance-related gene exploration.Scientific data · 2023Article
- Affinity Purification and Molecular Characterization of Angiotensin-Converting Enzyme (ACE)-Inhibitory Peptides fromMarine drugs · 2023Article
- High-quality wild barley genome assemblies and annotation with Nanopore long reads and Hi-C sequencing data.Scientific data · 2023Article
- New algorithms for accurate and efficient de novo genome assembly from long DNA sequencing reads.Life science alliance · 2023Article
- Chromosome-level haplotype-resolved genome assembly for Takifugu ocellatus using PacBio and Hi-C technologies.Scientific data · 2023Article
- Chromosomal genome and population genetic analyses to reveal genetic architecture, breeding history and genes related to cadmium accumulation in Lentinula edodes.BMC genomics · 2022Article
- Telomere-to-telomere assembly of a fish Y chromosome reveals the origin of a young sex chromosome pair.Genome biology · 2021Article
- A streamlined workflow for conversion, peer review, and publication of genomics metadata as omics data papers.GigaScience · 2021Article
- Molecular Characterization of the Von Willebrand Factor Type D Domain of Vitellogenin fromMarine drugs · 2021Article
- Improved contiguity of the threespine stickleback genome using long-read sequencing.G3 (Bethesda, Md.) · 2021Article
- Genome Analysis ofFrontiers in genetics · 2021Article
- Chromosome-level genome assembly of the humpback puffer,GigaByte (Hong Kong, China) · 2021Article
- Genome-Scale Phylogenetic and Population Genetic Studies Provide Insight Into Introgression and Adaptive Evolution ofFrontiers in genetics · 2021Article
- Sequencing smart: De novo sequencing and assembly approaches for a non-model mammal.GigaScience · 2020Article
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Authors and funding
16 authors at 4 institutions in 1 country.
Funding
No grant is acknowledged in the PubMed record.
Abstract
Pufferfish are ideal models for vertebrate chromosome evolution studies. The yellowbelly pufferfish, Takifugu flavidus, is an important marine fish species in the aquaculture industry and ecology of East Asia. The chromosome assembly of the species could facilitate the study of chromosome evolution and functional gene mapping. To this end, 44, 27 and 50 Gb reads were generated for genome assembly using Illumina, PacBio and Hi-C sequencing technologies, respectively. More than 13 Gb full-length transcripts were sequenced on the PacBio platform. A 366 Mb genome was obtained with the contig of 4.4 Mb and scaffold N50 length of 15.7 Mb. 266 contigs were reliably assembled into 22 chromosomes, representing 95.9% of the total genome. A total of 29,416 protein-coding genes were predicted and 28,071 genes were functionally annotated. More than 97.7% of the BUSCO genes were successfully detected in the genome. The genome resource in this work will be used for the conservation and population genetics of the yellowbelly pufferfish, as well as in vertebrate chromosome evolution studies.
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