Evidence map›Paper›PMID 31704931›Full record

ArticleNature communications2019

Macrophage-associated wound healing contributes to African green monkey SIV pathogenesis control.

Fredrik Barrenas, Kevin Raehtz, Cuiling Xu, Lynn Law, Richard R Green, Guido Silvestri, Steven E Bosinger, Andrew Nishida, Qingsheng Li, Wuxun Lu and 14 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2019. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 23 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed, 1 pooled it
2.8field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 1 synthesis or guideline pooled it, 28 citations in OpenAlex.

  1. The Hitchhiker Guide to CD4Frontiers in immunology · 2021
    Pooled it
  2. Review
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Review
  11. Article
  12. Article
  13. Prolonged experimental CD4Nature communications · 2023
    Article
  14. Article
  15. Review
  16. Article
  17. Review
  18. Review
  19. Early treatment with anti-αFrontiers in immunology · 2022
    Article
  20. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

24 authors at 7 institutions in 4 countries.

Fredrik BarrenasDepartment of Microbiology, University of Washington, Seattle, WA, USA.
Kevin RaehtzDivision of Infectious Diseases, Department of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Cuiling XuDepartment of Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Lynn LawDepartment of Immunology, University of Washington, Seattle, WA, USA.
Richard R GreenDepartment of Immunology, University of Washington, Seattle, WA, USA.
Guido SilvestriDepartment of Pathology & Laboratory Medicine, Emory University, Atlanta, GA, USA.
Steven E BosingerDepartment of Pathology & Laboratory Medicine, Emory University, Atlanta, GA, USA.
Andrew NishidaDepartment of Microbiology, University of Washington, Seattle, WA, USA.
Qingsheng LiNebraska Center for Virology, School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, USA.ORCID http://orcid.org/0000-0003-4101-4073
Wuxun LuNebraska Center for Virology, School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, USA.
Jianshui ZhangNebraska Center for Virology, School of Biological Sciences, University of Nebraska-Lincoln, Lincoln, NE, USA.
Matthew J ThomasDepartment of Immunology, University of Washington, Seattle, WA, USA.
Jean ChangDepartment of Immunology, University of Washington, Seattle, WA, USA.
Elise SmithDepartment of Immunology, University of Washington, Seattle, WA, USA.
Jeffrey M WeissDepartment of Microbiology, University of Washington, Seattle, WA, USA.
Reem A DawoudDepartment of Pathology & Laboratory Medicine, Emory University, Atlanta, GA, USA.
George H RichterDepartment of Pathology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Anita TrichelDivison of Laboratory Animal Resources, University of Pittsburgh, Pittsburgh, PA, USA.
Dongzhu MaDepartment of Orthopedic Surgery, University of Pittsburgh, Pittsburgh, PA, USA.
Xinxia PengDepartment of Molecular Biomedical Sciences, North Carolina State University, Raleigh, NC, USA.ORCID http://orcid.org/0000-0002-0117-3582
Jan KomorowskiDepartment of Cell and Molecular Biology, Uppsala University, Uppsala, Sweden.ORCID http://orcid.org/0000-0002-0766-8789
Cristian ApetreiDivision of Infectious Diseases, Department of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Ivona PandreaDepartment of Microbiology and Molecular Genetics, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Michael GaleDepartment of Immunology, University of Washington, Seattle, WA, USA. mgale@uw.edu.ORCID http://orcid.org/0000-0002-6332-7436
University of Washington · USUniversity of Pittsburgh · USUniversity of Nebraska–Lincoln · USOregon National Primate Research Center · USUppsala University · SEEmory University · USNorth Carolina State University · US

Funding

Washington National Primate Research CenterP51OD010425 · OD · UNIVERSITY OF WASHINGTON · PI Mari Ostendorf · 2012 to 2026
$201.8M
Yerkes National Primate Research Center Role of type-I IFN in regulating COVID-19 induced inflammation and pathogenesisP51OD011132 · OD · EMORY UNIVERSITY · PI Joon Sup Lee · 2012 to 2026
$167.0M
University of Washington/Fred Hutch Center for AIDS ResearchP30AI027757 · NIAID · UNIVERSITY OF WASHINGTON · PI Kenneth Sherr · 1988 to 2026
$104.9M
SIV Pathogenesis in African Green Monkeys and Pigtailed MacaquesR01HL117715 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VASILE PANDREA, IVONA · 2012 to 2021
$7.0M
Interventions to Reduce Hypercoagulability in Old SIV-Infected NHPsR01HL123096 · NHLBI · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI VASILE PANDREA, IVONA · 2015 to 2025
$6.8M
Assessing the Role of GI Tract Dysfunction to HIV/SIV Disease ProgressionR01DK113919 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CRISTIAN APETREI, Ivona Vasile-Pandrea · 2017 to 2026
$5.7M
New Strategy to Improve Gastrointestinal Health in SIV/HIVR01DK119936 · NIDDK · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI APETREI, CRISTIAN · 2018 to 2022
$5.1M
Animal Model for Testing SIV Latency Reversal StrategiesR01AI119346 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI APETREI, CRISTIAN · 2015 to 2019
$3.4M
PITT AIDS RESEARCH TRAINING PROGRAMT32AI065380 · NIAID · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI BARRATT-BOYES, SIMON M · 2005 to 2020
$3.2M
Transcriptome resources for comparative primate models of lentivirus infectionR24OD010445 · OD · EMORY UNIVERSITY · PI SILVESTRI, GUIDO · 2013 to 2016
$3.2M
Development of nonhuman primate reference transcriptome resourcesR24OD011172 · OD · UNIVERSITY OF WASHINGTON · PI KATZE, MICHAEL G · 2012 to 2014
$2.3M
Animal Model for SIV Infection ControlR01RR025781 · NCRR · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI APETREI, CRISTIAN, VASILE PANDREA, IVONA · 2009 to 2010
$1.9M
NCRR NIH HHS R01 RR025781NHLBI NIH HHS R01 HL117715NHLBI NIH HHS R01 HL123096NIAID NIH HHS HHSN272201300010CNIAID NIH HHS HHSN272201300010INIAID NIH HHS N01 AI030018NIAID NIH HHS N01 AI060006NIAID NIH HHS P30 AI027757NIAID NIH HHS R01 AI119346NIAID NIH HHS T32 AI065380NIDDK NIH HHS R01 DK087625NIDDK NIH HHS R01 DK113919NIDDK NIH HHS R01 DK119936NIH HHS P51 OD010425NIH HHS P51 OD011132NIH HHS R24 OD010445NIH HHS R24 OD011157NIH HHS R24 OD011172
6 · The paper itself

Abstract

Natural hosts of simian immunodeficiency virus (SIV) avoid AIDS despite lifelong infection. Here, we examined how this outcome is achieved by comparing a natural SIV host, African green monkey (AGM) to an AIDS susceptible species, rhesus macaque (RM). To asses gene expression profiles from acutely SIV infected AGMs and RMs, we developed a systems biology approach termed Conserved Gene Signature Analysis (CGSA), which compared RNA sequencing data from rectal AGM and RM tissues to various other species. We found that AGMs rapidly activate, and then maintain, evolutionarily conserved regenerative wound healing mechanisms in mucosal tissue. The wound healing protein fibronectin shows distinct tissue distribution and abundance kinetics in AGMs. Furthermore, AGM monocytes exhibit an embryonic development and repair/regeneration signature featuring TGF-β and concomitant reduced expression of inflammatory genes compared to RMs. This regenerative wound healing process likely preserves mucosal integrity and prevents inflammatory insults that underlie immune exhaustion in RMs.

Indexed as

AnimalsChlorocebus aethiopsDisease ProgressionFibronectinsIntestinal MucosaMacaca mulattaMacrophagesRectumSimian Acquired Immunodeficiency SyndromeSimian Immunodeficiency VirusSystems BiologyTranscriptomeTransforming Growth Factor betaWound HealingFibronectinsTransforming Growth Factor beta

Identifiers

PMID31704931
PMCPMC6841668
OpenAlexW2986474759

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.